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Add ability to use CSI indexes in @jbrowse/img #4478

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merged 3 commits into from
Jul 10, 2024
Merged

Add ability to use CSI indexes in @jbrowse/img #4478

merged 3 commits into from
Jul 10, 2024

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cmdcolin
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@cmdcolin cmdcolin commented Jul 9, 2024

Let's you specify a command like this

--bam myfile.bam index:myfile.bam.csi
--gffgz myfile.gff.gz index:myfile.gff.gz.csi
--bedgz myfile.bed.gz index:myfile.bed.gz.csi

it could potentially auto-detect whether the csi index exists, but this might be best done in the adapter itself

@cmdcolin cmdcolin merged commit f7413b2 into main Jul 10, 2024
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this also removes the "MUI emotion cache" from @jbrowse/img. there was some vague comment that it helped with lgv headers but didn't appear truly needed.

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