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# warning: unofficial base image is not stable and may change in the future! | ||
FROM docker.io/fnndsc/mni-conda-base:unofficial | ||
FROM docker.io/fnndsc/pl-fetal-surface-extract:base-1 | ||
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LABEL org.opencontainers.image.authors="Jennings Zhang <[email protected]>" \ | ||
org.opencontainers.image.title="pl-fetal-surface-extract" \ | ||
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* |
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FROM docker.io/fnndsc/microminc-builder:latest as builder | ||
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RUN microminc.sh \ | ||
adapt_object_mesh \ | ||
dilate_volume \ | ||
minccalc \ | ||
mincchamfer \ | ||
mincdefrag \ | ||
mincresample \ | ||
mincreshape \ | ||
param2xfm \ | ||
sphere_mesh \ | ||
surface_mask2 \ | ||
transform_objects \ | ||
inflate_to_sphere_implicit \ | ||
inflate_to_sphere \ | ||
create_tetra \ | ||
print_n_polygons \ | ||
subdivide_polygons \ | ||
interpolate_sphere \ | ||
depth_potential \ | ||
vertstats_math \ | ||
volume_object_evaluate \ | ||
adapt_metric \ | ||
depth_potential \ | ||
/microminc | ||
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# perl libraries need to be copied manually | ||
RUN cp -r /opt/CIVET/dist/perl /microminc/perl | ||
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# MNI data needs to be copied manually | ||
RUN mkdir -vp /microminc/share \ | ||
&& cp -rv "$MNI_DATAPATH/surface-extraction" "/microminc/share" | ||
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FROM fnndsc/conda:python3.11.2 | ||
COPY --from=builder /microminc /opt/microminc | ||
ENV PATH=/opt/microminc/bin:$PATH \ | ||
LD_LIBRARY_PATH=/opt/microminc/lib:$LD_LIBRARY_PATH \ | ||
MINC_FORCE_V2=1 MINC_COMPRESS=4 VOLUME_CACHE_THRESHOLD=-1 \ | ||
MNI_DATAPATH=/opt/microminc/share \ | ||
PERL5LIB=/opt/microminc/perl |
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Uses [microminc](https://github.com/FNNDSC/microminc) | ||
to create a minimized base image for `pl-fetal-surface-extract`, | ||
which copies the necessary minc-tool binaries to a multi-arch conda image. | ||
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This image is built and pushed manually. |
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#!/bin/bash -ex | ||
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exec docker buildx build --push \ | ||
--platform linux/amd64,linux/arm64,linux/ppc64le \ | ||
--build-arg http_proxy=$http_proxy \ | ||
-t docker.io/fnndsc/pl-fetal-surface-extract:base-1 . |
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