This repository contains course materials for Galaxy courses taught by/at the Erasmus Medical Center.
Currently we have the following training modules:
- Galaxy 101
First introduction to Galaxy. - Variant Analysis (DNA)
Quality Control, mapping, visualisation with Trackster, variant calling, annotation. - RNASeq Basic (TODO)
RNAseq analysis with Tuxedo pipeline (Bowtie, Tophat, Cufflinks). - RNASeq Advanced
Differential Gene Expression Analysis. - Cancer Analysis
Fusion Genes, Virtual Normal Correction, Reporting
converting to pdf:
install wkhtmltopdf:
sudo apt-get install wkhtmltopdf
convert the slides:
wkhtmltopdf --page-width 111 --page-height 148 -O "Landscape" <html slides> outputslides.pdf
for example for the current modules with markdown slides:
wkhtmltopdf --page-width 111 --page-height 148 -O "Landscape" Galaxy101/Galaxy101_slides.html Galaxy101_slides.pdf
wkhtmltopdf --page-width 111 --page-height 148 -O "Landscape" Cancer_Analysis/Cancer_Analysis_slides.html Cancer_Analysis_slides.pdf
wkhtmltopdf --page-width 111 --page-height 148 -O "Landscape" Variant_Analysis/VariantAnalysis_slides.html VariantAnalysis_slides.pdf
This repository contains the templates to build our Galaxy course materials. Please change the settings in configure.tex before compilation (make).
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
