PDB2PQR webserver not working for RNA molecules (with residue names RA, RC, RU, RG) #175

srdjan125 · 2021-09-28T13:30:19Z

srdjan125
Sep 28, 2021

Hello,

I have tried to protonate RNA molecule but webserver is not working and not giving me pqr files.
Few months ago I was able to do it by changing residue names URA to RU, ADE to RA, GUA --- RG and CYT --RC. However now it is not working.

I have tried several options: keeping residue names RA/RG/RU/RC , keeping them A/G/U/C or ADE/GUA/URA/CYT but none of them is working.

I have tried to use it on my previous RNA structure which I could convert few months ago, now it is not working.

Can someone help me what might be the issue?

Thank you.

sobolevnrm · 2021-09-28T14:28:48Z

sobolevnrm
Sep 28, 2021
Maintainer

Can you please attach an example PDB file (you'll need to change the suffix of the file to .txt to upload)? Thanks.

0 replies

srdjan125 · 2021-09-28T14:57:08Z

srdjan125
Sep 28, 2021
Author

Hello, Sure, I am attaching two files now: RNA.txt (structure of RNA which I wanted to protonate today) and RNA_previous.txt (structure of RNA which I could protonate few months ago but today is not working). For now the only solution I could find is to protonate protein with PDB2PQR and RNA with H++ webserver, but I need to check if APBS will accept those PQR files generated by different programs.

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________________________________ From: Nathan Baker ***@***.***> Sent: Tuesday, September 28, 2021 4:28 PM To: Electrostatics/apbs ***@***.***> Cc: srdjan125 ***@***.***>; Author ***@***.***> Subject: Re: [Electrostatics/apbs] PDB2PQR webserver not working for RNA molecules (with residue names RA, RC, RU, RG) (Discussion #175) Can you please attach an example PDB file (you'll need to change the suffix of the file to .txt to upload)? Thanks. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#175 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AUJN6QP7Z5K6A7IJQYXU4EDUEHGKXANCNFSM5E5N2JDA>. Triage notifications on the go with GitHub Mobile for iOS<https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android<https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. CRYST1 0.000 0.000 0.000 90.00 90.00 90.00 P 1 1 ATOM 1 O5' RU A2 647 106.489 66.775 87.337 0.00 0.00 ATOM 2 C5' RU A2 647 106.890 65.915 86.259 0.00 0.00 ATOM 3 C4' RU A2 647 107.109 64.511 86.750 0.00 0.00 ATOM 4 O4' RU A2 647 107.471 64.485 88.152 0.00 0.00 ATOM 5 C1' RU A2 647 106.709 63.473 88.803 0.00 0.00 ATOM 6 N1 RU A2 647 106.435 63.974 90.158 0.00 0.00 ATOM 7 C6 RU A2 647 106.271 65.319 90.383 0.00 0.00 ATOM 8 C2 RU A2 647 106.353 63.049 91.178 0.00 0.00 ATOM 9 O2 RU A2 647 106.493 61.854 91.001 0.00 0.00 ATOM 10 N3 RU A2 647 106.096 63.588 92.412 0.00 0.00 ATOM 11 C4 RU A2 647 105.920 64.922 92.710 0.00 0.00 ATOM 12 O4 RU A2 647 105.698 65.257 93.876 0.00 0.00 ATOM 13 C5 RU A2 647 106.016 65.817 91.598 0.00 0.00 ATOM 14 C2' RU A2 647 105.421 63.356 87.985 0.00 0.00 ATOM 15 O2' RU A2 647 104.753 62.139 88.232 0.00 0.00 ATOM 16 C3' RU A2 647 105.951 63.543 86.573 0.00 0.00 ATOM 17 O3' RU A2 647 106.441 62.316 86.028 0.00 0.00 ATOM 18 P RG A2 648 105.926 61.895 84.565 0.00 0.00 ATOM 19 O1P RG A2 648 104.767 62.765 84.239 0.00 0.00 ATOM 20 O2P RG A2 648 105.768 60.415 84.556 0.00 0.00 ATOM 21 O5' RG A2 648 107.120 62.251 83.575 0.00 0.00 ATOM 22 C5' RG A2 648 107.518 63.603 83.289 0.00 0.00 ATOM 23 C4' RG A2 648 108.992 63.666 82.977 0.00 0.00 ATOM 24 O4' RG A2 648 109.748 63.449 84.206 0.00 0.00 ATOM 25 C1' RG A2 648 110.973 62.815 83.891 0.00 0.00 ATOM 26 N9 RG A2 648 111.064 61.560 84.619 0.00 0.00 ATOM 27 C4 RG A2 648 112.195 60.790 84.779 0.00 0.00 ATOM 28 N2 RG A2 648 115.585 60.269 84.191 0.00 0.00 ATOM 29 N3 RG A2 648 113.419 61.063 84.291 0.00 0.00 ATOM 30 C2 RG A2 648 114.316 60.148 84.601 0.00 0.00 ATOM 31 N1 RG A2 648 114.027 59.028 85.349 0.00 0.00 ATOM 32 C6 RG A2 648 112.769 58.740 85.857 0.00 0.00 ATOM 33 O6 RG A2 648 112.637 57.675 86.533 0.00 0.00 ATOM 34 C5 RG A2 648 111.791 59.709 85.535 0.00 0.00 ATOM 35 N7 RG A2 648 110.439 59.800 85.840 0.00 0.00 ATOM 36 C8 RG A2 648 110.053 60.909 85.279 0.00 0.00 ATOM 37 C2' RG A2 648 111.034 62.665 82.370 0.00 0.00 ATOM 38 O2' RG A2 648 111.668 63.812 81.830 0.00 0.00 ATOM 39 C3' RG A2 648 109.541 62.579 82.062 0.00 0.00 ATOM 40 O3' RG A2 648 109.242 62.808 80.697 0.00 0.00 ATOM 41 P RC A2 649 108.992 61.540 79.744 0.00 0.00 ATOM 42 O1P RC A2 649 108.362 62.020 78.488 0.00 0.00 ATOM 43 O2P RC A2 649 108.296 60.481 80.521 0.00 0.00 ATOM 44 O5' RC A2 649 110.454 61.006 79.407 0.00 0.00 ATOM 45 C5' RC A2 649 111.547 61.919 79.190 0.00 0.00 ATOM 46 C4' RC A2 649 112.863 61.182 79.313 0.00 0.00 ATOM 47 O4' RC A2 649 113.125 60.933 80.726 0.00 0.00 ATOM 48 C1' RC A2 649 113.702 59.651 80.874 0.00 0.00 ATOM 49 N1 RC A2 649 112.844 58.807 81.699 0.00 0.00 ATOM 50 C6 RC A2 649 111.496 59.011 81.808 0.00 0.00 ATOM 51 C5 RC A2 649 110.739 58.221 82.578 0.00 0.00 ATOM 52 C2 RC A2 649 113.441 57.747 82.392 0.00 0.00 ATOM 53 O2 RC A2 649 114.658 57.573 82.263 0.00 0.00 ATOM 54 N3 RC A2 649 112.687 56.940 83.174 0.00 0.00 ATOM 55 C4 RC A2 649 111.376 57.160 83.278 0.00 0.00 ATOM 56 N4 RC A2 649 110.678 56.328 84.053 0.00 0.00 ATOM 57 C2' RC A2 649 114.050 59.140 79.483 0.00 0.00 ATOM 58 O2' RC A2 649 115.330 59.617 79.103 0.00 0.00 ATOM 59 C3' RC A2 649 112.924 59.801 78.679 0.00 0.00 ATOM 60 O3' RC A2 649 113.289 59.857 77.303 0.00 0.00 ATOM 61 P RU A2 650 112.775 58.672 76.348 0.00 0.00 ATOM 62 O1P RU A2 650 112.974 59.075 74.935 0.00 0.00 ATOM 63 O2P RU A2 650 111.447 58.236 76.878 0.00 0.00 ATOM 64 O5' RU A2 650 113.757 57.442 76.624 0.00 0.00 ATOM 65 C5' RU A2 650 115.187 57.538 76.441 0.00 0.00 ATOM 66 C4' RU A2 650 115.837 56.244 76.887 0.00 0.00 ATOM 67 O4' RU A2 650 115.784 56.183 78.345 0.00 0.00 ATOM 68 C1' RU A2 650 115.519 54.848 78.738 0.00 0.00 ATOM 69 N1 RU A2 650 114.249 54.828 79.457 0.00 0.00 ATOM 70 C6 RU A2 650 113.283 55.792 79.267 0.00 0.00 ATOM 71 C2 RU A2 650 114.043 53.779 80.330 0.00 0.00 ATOM 72 O2 RU A2 650 114.870 52.901 80.487 0.00 0.00 ATOM 73 N3 RU A2 650 112.842 53.802 80.982 0.00 0.00 ATOM 74 C4 RU A2 650 111.840 54.744 80.856 0.00 0.00 ATOM 75 O4 RU A2 650 110.828 54.621 81.544 0.00 0.00 ATOM 76 C5 RU A2 650 112.114 55.796 79.926 0.00 0.00 ATOM 77 C2' RU A2 650 115.687 53.965 77.520 0.00 0.00 ATOM 78 O2' RU A2 650 117.069 53.703 77.303 0.00 0.00 ATOM 79 C3' RU A2 650 115.140 54.946 76.464 0.00 0.00 ATOM 80 O3' RU A2 650 115.576 54.511 75.190 0.00 0.00 ATOM 81 P RC A2 651 114.657 53.549 74.297 0.00 0.00 ATOM 82 O1P RC A2 651 115.389 53.356 73.019 0.00 0.00 ATOM 83 O2P RC A2 651 113.276 54.080 74.291 0.00 0.00 ATOM 84 O5' RC A2 651 114.598 52.143 75.044 0.00 0.00 ATOM 85 C5' RC A2 651 115.813 51.372 75.163 0.00 0.00 ATOM 86 C4' RC A2 651 115.615 50.312 76.206 0.00 0.00 ATOM 87 O4' RC A2 651 115.286 50.939 77.467 0.00 0.00 ATOM 88 C1' RC A2 651 114.393 50.082 78.174 0.00 0.00 ATOM 89 N1 RC A2 651 113.145 50.777 78.474 0.00 0.00 ATOM 90 C6 RC A2 651 112.714 51.891 77.820 0.00 0.00 ATOM 91 C5 RC A2 651 111.545 52.477 78.146 0.00 0.00 ATOM 92 C2 RC A2 651 112.349 50.219 79.487 0.00 0.00 ATOM 93 O2 RC A2 651 112.752 49.178 80.019 0.00 0.00 ATOM 94 N3 RC A2 651 111.182 50.799 79.819 0.00 0.00 ATOM 95 C4 RC A2 651 110.774 51.912 79.207 0.00 0.00 ATOM 96 N4 RC A2 651 109.619 52.467 79.602 0.00 0.00 ATOM 97 C2' RC A2 651 114.231 48.796 77.386 0.00 0.00 ATOM 98 O2' RC A2 651 115.210 47.850 77.773 0.00 0.00 ATOM 99 C3' RC A2 651 114.448 49.341 75.981 0.00 0.00 ATOM 100 O3' RC A2 651 114.786 48.349 75.040 0.00 0.00 ATOM 101 P RC A2 652 113.638 47.585 74.227 0.00 0.00 ATOM 102 O1P RC A2 652 114.337 46.736 73.225 0.00 0.00 ATOM 103 O2P RC A2 652 112.624 48.563 73.775 0.00 0.00 ATOM 104 O5' RC A2 652 112.922 46.646 75.289 0.00 0.00 ATOM 105 C5' RC A2 652 113.642 45.545 75.869 0.00 0.00 ATOM 106 C4' RC A2 652 112.755 44.826 76.846 0.00 0.00 ATOM 107 O4' RC A2 652 112.419 45.677 77.971 0.00 0.00 ATOM 108 C1' RC A2 652 111.093 45.365 78.388 0.00 0.00 ATOM 109 N1 RC A2 652 110.276 46.571 78.335 0.00 0.00 ATOM 110 C6 RC A2 652 110.549 47.613 77.512 0.00 0.00 ATOM 111 C5 RC A2 652 109.789 48.724 77.485 0.00 0.00 ATOM 112 C2 RC A2 652 109.132 46.602 79.139 0.00 0.00 ATOM 113 O2 RC A2 652 108.860 45.589 79.811 0.00 0.00 ATOM 114 N3 RC A2 652 108.348 47.694 79.121 0.00 0.00 ATOM 115 C4 RC A2 652 108.656 48.744 78.358 0.00 0.00 ATOM 116 N4 RC A2 652 107.879 49.829 78.430 0.00 0.00 ATOM 117 C2' RC A2 652 110.621 44.149 77.630 0.00 0.00 ATOM 118 O2' RC A2 652 111.108 42.969 78.257 0.00 0.00 ATOM 119 C3' RC A2 652 111.381 44.389 76.321 0.00 0.00 ATOM 120 O3' RC A2 652 111.527 43.173 75.597 0.00 0.00 ATOM 121 P RU A2 653 110.554 42.862 74.367 0.00 0.00 ATOM 122 O1P RU A2 653 110.933 41.513 73.886 0.00 0.00 ATOM 123 O2P RU A2 653 110.591 43.998 73.412 0.00 0.00 ATOM 124 O5' RU A2 653 109.101 42.882 75.006 0.00 0.00 ATOM 125 C5' RU A2 653 108.679 41.863 75.933 0.00 0.00 ATOM 126 C4' RU A2 653 107.340 42.236 76.515 0.00 0.00 ATOM 127 O4' RU A2 653 107.462 43.458 77.279 0.00 0.00 ATOM 128 C1' RU A2 653 106.295 44.234 77.196 0.00 0.00 ATOM 129 N1 RU A2 653 106.588 45.540 76.593 0.00 0.00 ATOM 130 C6 RU A2 653 107.564 45.709 75.641 0.00 0.00 ATOM 131 C2 RU A2 653 105.834 46.618 77.031 0.00 0.00 ATOM 132 O2 RU A2 653 104.949 46.501 77.859 0.00 0.00 ATOM 133 N3 RU A2 653 106.146 47.823 76.451 0.00 0.00 ATOM 134 C4 RU A2 653 107.083 48.055 75.472 0.00 0.00 ATOM 135 O4 RU A2 653 107.246 49.202 75.057 0.00 0.00 ATOM 136 C5 RU A2 653 107.822 46.895 75.063 0.00 0.00 ATOM 137 C2' RU A2 653 105.318 43.431 76.325 0.00 0.00 ATOM 138 O2' RU A2 653 104.502 42.632 77.163 0.00 0.00 ATOM 139 C3' RU A2 653 106.251 42.573 75.479 0.00 0.00 ATOM 140 O3' RU A2 653 105.609 41.359 75.063 0.00 0.00 ATOM 141 P RA A2 654 104.835 41.316 73.631 0.00 0.00 ATOM 142 O1P RA A2 654 103.802 42.382 73.642 0.00 0.00 ATOM 143 O2P RA A2 654 104.467 39.896 73.448 0.00 0.00 ATOM 144 O5' RA A2 654 105.991 41.754 72.629 0.00 0.00 ATOM 145 C5' RA A2 654 105.809 41.647 71.203 0.00 0.00 ATOM 146 C4' RA A2 654 106.427 42.825 70.493 0.00 0.00 ATOM 147 O4' RA A2 654 105.646 44.034 70.703 0.00 0.00 ATOM 148 C1' RA A2 654 106.455 45.077 71.169 0.00 0.00 ATOM 149 N9 RA A2 654 105.655 45.851 72.119 0.00 0.00 ATOM 150 C5 RA A2 654 104.673 47.456 73.260 0.00 0.00 ATOM 151 N7 RA A2 654 104.238 46.259 73.822 0.00 0.00 ATOM 152 C8 RA A2 654 104.846 45.335 73.110 0.00 0.00 ATOM 153 N1 RA A2 654 104.993 49.729 72.824 0.00 0.00 ATOM 154 C2 RA A2 654 105.819 49.366 71.833 0.00 0.00 ATOM 155 N3 RA A2 654 106.161 48.135 71.452 0.00 0.00 ATOM 156 C4 RA A2 654 105.545 47.214 72.214 0.00 0.00 ATOM 157 C6 RA A2 654 104.389 48.795 73.577 0.00 0.00 ATOM 158 N6 RA A2 654 103.573 49.175 74.566 0.00 0.00 ATOM 159 C2' RA A2 654 107.633 44.351 71.857 0.00 0.00 ATOM 160 O2' RA A2 654 108.728 45.227 72.008 0.00 0.00 ATOM 161 C3' RA A2 654 107.859 43.189 70.878 0.00 0.00 ATOM 162 O3' RA A2 654 108.553 43.728 69.746 0.00 0.00 ATOM 163 P RG A2 655 109.274 42.615 68.823 0.00 0.00 ATOM 164 O1P RG A2 655 108.855 41.251 69.206 0.00 0.00 ATOM 165 O2P RG A2 655 110.728 42.931 68.769 0.00 0.00 ATOM 166 O5' RG A2 655 108.654 42.964 67.405 0.00 0.00 ATOM 167 C5' RG A2 655 108.525 44.307 66.931 0.00 0.00 ATOM 168 C4' RG A2 655 107.078 44.743 66.954 0.00 0.00 ATOM 169 O4' RG A2 655 107.096 46.207 66.950 0.00 0.00 ATOM 170 C1' RG A2 655 106.588 46.646 65.711 0.00 0.00 ATOM 171 N9 RG A2 655 107.176 47.911 65.338 0.00 0.00 ATOM 172 C4 RG A2 655 106.856 49.105 65.960 0.00 0.00 ATOM 173 N2 RG A2 655 105.020 50.787 68.385 0.00 0.00 ATOM 174 N3 RG A2 655 105.977 49.235 66.970 0.00 0.00 ATOM 175 C2 RG A2 655 105.861 50.488 67.379 0.00 0.00 ATOM 176 N1 RG A2 655 106.558 51.526 66.833 0.00 0.00 ATOM 177 C6 RG A2 655 107.466 51.412 65.797 0.00 0.00 ATOM 178 O6 RG A2 655 108.039 52.475 65.395 0.00 0.00 ATOM 179 C5 RG A2 655 107.606 50.080 65.344 0.00 0.00 ATOM 180 N7 RG A2 655 108.386 49.516 64.347 0.00 0.00 ATOM 181 C8 RG A2 655 108.097 48.237 64.385 0.00 0.00 ATOM 182 C2' RG A2 655 106.697 45.468 64.758 0.00 0.00 ATOM 183 O2' RG A2 655 105.849 45.618 63.640 0.00 0.00 ATOM 184 C3' RG A2 655 106.238 44.358 65.722 0.00 0.00 ATOM 185 O3' RG A2 655 104.842 44.656 66.088 0.00 0.00 ATOM 186 P RU A2 656 103.552 44.112 65.235 0.00 0.00 ATOM 187 O1P RU A2 656 103.891 43.118 64.186 0.00 0.00 ATOM 188 O2P RU A2 656 102.824 45.355 64.860 0.00 0.00 ATOM 189 O5' RU A2 656 102.664 43.428 66.365 0.00 0.00 ATOM 190 C5' RU A2 656 103.046 42.154 66.935 0.00 0.00 ATOM 191 C4' RU A2 656 102.505 42.089 68.351 0.00 0.00 ATOM 192 O4' RU A2 656 103.356 42.943 69.165 0.00 0.00 ATOM 193 C1' RU A2 656 102.561 43.639 70.106 0.00 0.00 ATOM 194 N1 RU A2 656 102.814 45.069 69.938 0.00 0.00 ATOM 195 C6 RU A2 656 103.651 45.561 68.961 0.00 0.00 ATOM 196 C2 RU A2 656 102.168 45.922 70.814 0.00 0.00 ATOM 197 O2 RU A2 656 101.426 45.499 71.699 0.00 0.00 ATOM 198 N3 RU A2 656 102.442 47.249 70.612 0.00 0.00 ATOM 199 C4 RU A2 656 103.276 47.814 69.660 0.00 0.00 ATOM 200 O4 RU A2 656 103.399 49.039 69.617 0.00 0.00 ATOM 201 C5 RU A2 656 103.915 46.868 68.794 0.00 0.00 ATOM 202 C2' RU A2 656 101.139 43.122 69.984 0.00 0.00 ATOM 203 O2' RU A2 656 100.911 42.041 70.875 0.00 0.00 ATOM 204 C3' RU A2 656 101.110 42.682 68.531 0.00 0.00 ATOM 205 O3' RU A2 656 100.120 41.681 68.314 0.00 0.00 ATOM 206 P RA A2 657 98.730 42.054 67.613 0.00 0.00 ATOM 207 O1P RA A2 657 97.963 40.790 67.526 0.00 0.00 ATOM 208 O2P RA A2 657 99.104 42.822 66.393 0.00 0.00 ATOM 209 O5' RA A2 657 97.985 43.079 68.579 0.00 0.00 ATOM 210 C5' RA A2 657 97.351 42.556 69.774 0.00 0.00 ATOM 211 C4' RA A2 657 96.750 43.712 70.528 0.00 0.00 ATOM 212 O4' RA A2 657 97.783 44.667 70.897 0.00 0.00 ATOM 213 C1' RA A2 657 97.191 45.952 70.914 0.00 0.00 ATOM 214 N9 RA A2 657 98.013 46.849 70.123 0.00 0.00 ATOM 215 C5 RA A2 657 98.852 48.691 69.256 0.00 0.00 ATOM 216 N7 RA A2 657 99.579 47.640 68.711 0.00 0.00 ATOM 217 C8 RA A2 657 99.044 46.565 69.263 0.00 0.00 ATOM 218 N1 RA A2 657 98.069 50.843 69.765 0.00 0.00 ATOM 219 C2 RA A2 657 97.184 50.254 70.576 0.00 0.00 ATOM 220 N3 RA A2 657 97.005 48.954 70.829 0.00 0.00 ATOM 221 C4 RA A2 657 97.888 48.224 70.127 0.00 0.00 ATOM 222 C6 RA A2 657 98.937 50.083 69.080 0.00 0.00 ATOM 223 N6 RA A2 657 99.831 50.678 68.269 0.00 0.00 ATOM 224 C2' RA A2 657 95.732 45.827 70.568 0.00 0.00 ATOM 225 O2' RA A2 657 94.945 45.660 71.720 0.00 0.00 ATOM 226 C3' RA A2 657 95.813 44.596 69.672 0.00 0.00 ATOM 227 O3' RA A2 657 94.549 43.941 69.603 0.00 0.00 ATOM 228 P RC A2 658 93.694 44.135 68.259 0.00 0.00 ATOM 229 O1P RC A2 658 92.362 43.557 68.528 0.00 0.00 ATOM 230 O2P RC A2 658 94.498 43.693 67.096 0.00 0.00 ATOM 231 O5' RC A2 658 93.598 45.712 68.078 0.00 0.00 ATOM 232 C5' RC A2 658 92.805 46.540 68.929 0.00 0.00 ATOM 233 C4' RC A2 658 93.052 47.991 68.606 0.00 0.00 ATOM 234 O4' RC A2 658 94.460 48.308 68.801 0.00 0.00 ATOM 235 C1' RC A2 658 94.880 49.305 67.891 0.00 0.00 ATOM 236 N1 RC A2 658 95.975 48.765 67.068 0.00 0.00 ATOM 237 C6 RC A2 658 96.230 47.423 66.961 0.00 0.00 ATOM 238 C5 RC A2 658 97.248 46.970 66.207 0.00 0.00 ATOM 239 C2 RC A2 658 96.754 49.697 66.376 0.00 0.00 ATOM 240 O2 RC A2 658 96.477 50.904 66.491 0.00 0.00 ATOM 241 N3 RC A2 658 97.779 49.255 65.616 0.00 0.00 ATOM 242 C4 RC A2 658 98.032 47.950 65.515 0.00 0.00 ATOM 243 N4 RC A2 658 99.031 47.560 64.720 0.00 0.00 ATOM 244 C2' RC A2 658 93.654 49.648 67.024 0.00 0.00 ATOM 245 O2' RC A2 658 92.976 50.761 67.571 0.00 0.00 ATOM 246 C3' RC A2 658 92.867 48.341 67.121 0.00 0.00 ATOM 247 O3' RC A2 658 91.484 48.482 66.820 0.00 0.00 ATOM 248 P RG A2 659 90.934 48.093 65.370 0.00 0.00 ATOM 249 O1P RG A2 659 89.491 48.422 65.389 0.00 0.00 ATOM 250 O2P RG A2 659 91.416 46.737 64.989 0.00 0.00 ATOM 251 O5' RG A2 659 91.674 49.116 64.393 0.00 0.00 ATOM 252 C5' RG A2 659 91.288 50.507 64.356 0.00 0.00 ATOM 253 C4' RG A2 659 92.228 51.248 63.426 0.00 0.00 ATOM 254 O4' RG A2 659 93.593 51.159 63.942 0.00 0.00 ATOM 255 C1' RG A2 659 94.510 51.236 62.902 0.00 0.00 ATOM 256 N9 RG A2 659 95.267 49.998 62.811 0.00 0.00 ATOM 257 C4 RG A2 659 96.382 49.848 62.032 0.00 0.00 ATOM 258 N2 RG A2 659 98.663 51.279 59.859 0.00 0.00 ATOM 259 N3 RG A2 659 96.947 50.835 61.306 0.00 0.00 ATOM 260 C2 RG A2 659 98.000 50.410 60.634 0.00 0.00 ATOM 261 N1 RG A2 659 98.449 49.120 60.707 0.00 0.00 ATOM 262 C6 RG A2 659 97.879 48.100 61.452 0.00 0.00 ATOM 263 O6 RG A2 659 98.397 46.946 61.415 0.00 0.00 ATOM 264 C5 RG A2 659 96.746 48.532 62.169 0.00 0.00 ATOM 265 N7 RG A2 659 95.872 47.880 63.022 0.00 0.00 ATOM 266 C8 RG A2 659 94.999 48.789 63.375 0.00 0.00 ATOM 267 C2' RG A2 659 93.683 51.275 61.587 0.00 0.00 ATOM 268 O2' RG A2 659 93.480 52.587 61.114 0.00 0.00 ATOM 269 C3' RG A2 659 92.371 50.624 62.037 0.00 0.00 ATOM 270 O3' RG A2 659 91.242 50.944 61.224 0.00 0.00 ATOM 271 P RA A2 660 90.464 49.781 60.401 0.00 0.00 ATOM 272 O1P RA A2 660 89.381 50.454 59.646 0.00 0.00 ATOM 273 O2P RA A2 660 90.099 48.665 61.287 0.00 0.00 ATOM 274 O5' RA A2 660 91.625 49.338 59.407 0.00 0.00 ATOM 275 C5' RA A2 660 91.503 48.145 58.611 0.00 0.00 ATOM 276 C4' RA A2 660 91.978 48.394 57.204 0.00 0.00 ATOM 277 O4' RA A2 660 91.127 49.414 56.594 0.00 0.00 ATOM 278 C1' RA A2 660 91.948 50.221 55.768 0.00 0.00 ATOM 279 N9 RA A2 660 91.862 51.591 56.227 0.00 0.00 ATOM 280 C5 RA A2 660 91.962 53.784 56.304 0.00 0.00 ATOM 281 N7 RA A2 660 91.457 53.372 57.526 0.00 0.00 ATOM 282 C8 RA A2 660 91.412 52.070 57.433 0.00 0.00 ATOM 283 N1 RA A2 660 92.748 55.096 54.510 0.00 0.00 ATOM 284 C2 RA A2 660 92.941 53.959 53.838 0.00 0.00 ATOM 285 N3 RA A2 660 92.706 52.712 54.244 0.00 0.00 ATOM 286 C4 RA A2 660 92.216 52.698 55.495 0.00 0.00 ATOM 287 C6 RA A2 660 92.250 55.050 55.764 0.00 0.00 ATOM 288 N6 RA A2 660 92.057 56.188 56.430 0.00 0.00 ATOM 289 C2' RA A2 660 93.300 49.570 55.645 0.00 0.00 ATOM 290 O2' RA A2 660 93.237 48.561 54.651 0.00 0.00 ATOM 291 C3' RA A2 660 93.386 48.971 57.056 0.00 0.00 ATOM 292 O3' RA A2 660 94.359 47.955 57.066 0.00 0.00 ATOM 293 P RG A2 661 95.566 47.947 58.108 0.00 0.00 ATOM 294 O1P RG A2 661 96.185 46.599 57.998 0.00 0.00 ATOM 295 O2P RG A2 661 95.091 48.456 59.413 0.00 0.00 ATOM 296 O5' RG A2 661 96.607 49.026 57.543 0.00 0.00 ATOM 297 C5' RG A2 661 97.265 48.777 56.287 0.00 0.00 ATOM 298 C4' RG A2 661 97.436 50.064 55.526 0.00 0.00 ATOM 299 O4' RG A2 661 96.179 50.777 55.452 0.00 0.00 ATOM 300 C1' RG A2 661 96.449 52.160 55.566 0.00 0.00 ATOM 301 N9 RG A2 661 95.798 52.694 56.751 0.00 0.00 ATOM 302 C4 RG A2 661 95.525 54.024 56.967 0.00 0.00 ATOM 303 N2 RG A2 661 95.654 57.343 55.913 0.00 0.00 ATOM 304 N3 RG A2 661 95.825 55.039 56.127 0.00 0.00 ATOM 305 C2 RG A2 661 95.443 56.208 56.599 0.00 0.00 ATOM 306 N1 RG A2 661 94.812 56.383 57.816 0.00 0.00 ATOM 307 C6 RG A2 661 94.505 55.343 58.677 0.00 0.00 ATOM 308 O6 RG A2 661 93.915 55.591 59.765 0.00 0.00 ATOM 309 C5 RG A2 661 94.904 54.074 58.201 0.00 0.00 ATOM 310 N7 RG A2 661 94.784 52.807 58.756 0.00 0.00 ATOM 311 C8 RG A2 661 95.321 52.023 57.856 0.00 0.00 ATOM 312 C2' RG A2 661 97.929 52.377 55.416 0.00 0.00 ATOM 313 O2' RG A2 661 98.259 52.373 54.026 0.00 0.00 ATOM 314 C3' RG A2 661 98.416 51.093 56.095 0.00 0.00 ATOM 315 O3' RG A2 661 99.721 50.731 55.662 0.00 0.00 ATOM 316 P RA A2 662 100.973 51.227 56.534 0.00 0.00 ATOM 317 O1P RA A2 662 102.166 50.774 55.792 0.00 0.00 ATOM 318 O2P RA A2 662 100.806 50.837 57.946 0.00 0.00 ATOM 319 O5' RA A2 662 100.882 52.811 56.517 0.00 0.00 ATOM 320 C5' RA A2 662 101.179 53.571 55.324 0.00 0.00 ATOM 321 C4' RA A2 662 100.969 55.032 55.624 0.00 0.00 ATOM 322 O4' RA A2 662 99.566 55.311 55.867 0.00 0.00 ATOM 323 C1' RA A2 662 99.437 56.312 56.860 0.00 0.00 ATOM 324 N9 RA A2 662 98.802 55.724 58.050 0.00 0.00 ATOM 325 C5 RA A2 662 97.675 55.380 59.879 0.00 0.00 ATOM 326 N7 RA A2 662 98.246 54.157 59.554 0.00 0.00 ATOM 327 C8 RA A2 662 98.910 54.418 58.451 0.00 0.00 ATOM 328 N1 RA A2 662 96.452 57.036 60.989 0.00 0.00 ATOM 329 C2 RA A2 662 96.846 57.888 60.039 0.00 0.00 ATOM 330 N3 RA A2 662 97.621 57.642 58.987 0.00 0.00 ATOM 331 C4 RA A2 662 98.008 56.353 58.964 0.00 0.00 ATOM 332 C6 RA A2 662 96.853 55.755 60.948 0.00 0.00 ATOM 333 N6 RA A2 662 96.456 54.898 61.895 0.00 0.00 ATOM 334 C2' RA A2 662 100.856 56.777 57.222 0.00 0.00 ATOM 335 O2' RA A2 662 101.214 57.867 56.395 0.00 0.00 ATOM 336 C3' RA A2 662 101.660 55.527 56.893 0.00 0.00 ATOM 337 O3' RA A2 662 103.017 55.816 56.556 0.00 0.00 ATOM 338 P RG A2 663 104.173 55.420 57.583 0.00 0.00 ATOM 339 O1P RG A2 663 105.444 55.869 56.973 0.00 0.00 ATOM 340 O2P RG A2 663 104.037 54.042 58.061 0.00 0.00 ATOM 341 O5' RG A2 663 103.810 56.469 58.733 0.00 0.00 ATOM 342 C5' RG A2 663 104.001 56.049 60.088 0.00 0.00 ATOM 343 C4' RG A2 663 102.813 56.489 60.910 0.00 0.00 ATOM 344 O4' RG A2 663 101.627 55.767 60.470 0.00 0.00 ATOM 345 C1' RG A2 663 100.824 55.339 61.542 0.00 0.00 ATOM 346 N9 RG A2 663 101.007 53.879 61.682 0.00 0.00 ATOM 347 C4 RG A2 663 100.279 53.089 62.544 0.00 0.00 ATOM 348 N2 RG A2 663 97.781 52.801 64.947 0.00 0.00 ATOM 349 N3 RG A2 663 99.300 53.518 63.362 0.00 0.00 ATOM 350 C2 RG A2 663 98.768 52.535 64.084 0.00 0.00 ATOM 351 N1 RG A2 663 99.169 51.224 63.998 0.00 0.00 ATOM 352 C6 RG A2 663 100.176 50.768 63.159 0.00 0.00 ATOM 353 O6 RG A2 663 100.457 49.524 63.182 0.00 0.00 ATOM 354 C5 RG A2 663 100.756 51.802 62.382 0.00 0.00 ATOM 355 N7 RG A2 663 101.771 51.782 61.433 0.00 0.00 ATOM 356 C8 RG A2 663 101.884 53.031 61.055 0.00 0.00 ATOM 357 C2' RG A2 663 101.516 55.958 62.810 0.00 0.00 ATOM 358 O2' RG A2 663 101.021 57.256 63.106 0.00 0.00 ATOM 359 C3' RG A2 663 102.968 56.042 62.373 0.00 0.00 ATOM 360 O3' RG A2 663 103.751 57.002 63.089 0.00 0.00 ATOM 361 P RG A2 664 104.863 56.480 64.118 0.00 0.00 ATOM 362 O1P RG A2 664 105.448 57.663 64.782 0.00 0.00 ATOM 363 O2P RG A2 664 105.747 55.507 63.423 0.00 0.00 ATOM 364 O5' RG A2 664 104.009 55.628 65.159 0.00 0.00 ATOM 365 C5' RG A2 664 103.019 56.209 66.015 0.00 0.00 ATOM 366 C4' RG A2 664 102.268 55.115 66.751 0.00 0.00 ATOM 367 O4' RG A2 664 101.661 54.200 65.809 0.00 0.00 ATOM 368 C1' RG A2 664 101.699 52.874 66.313 0.00 0.00 ATOM 369 N9 RG A2 664 102.563 52.060 65.471 0.00 0.00 ATOM 370 C4 RG A2 664 102.633 50.689 65.444 0.00 0.00 ATOM 371 N2 RG A2 664 101.583 47.561 66.595 0.00 0.00 ATOM 372 N3 RG A2 664 101.911 49.833 66.195 0.00 0.00 ATOM 373 C2 RG A2 664 102.203 48.554 65.942 0.00 0.00 ATOM 374 N1 RG A2 664 103.139 48.153 65.015 0.00 0.00 ATOM 375 C6 RG A2 664 103.885 49.028 64.240 0.00 0.00 ATOM 376 O6 RG A2 664 104.722 48.572 63.411 0.00 0.00 ATOM 377 C5 RG A2 664 103.588 50.390 64.495 0.00 0.00 ATOM 378 N7 RG A2 664 104.105 51.551 63.943 0.00 0.00 ATOM 379 C8 RG A2 664 103.474 52.513 64.547 0.00 0.00 ATOM 380 C2' RG A2 664 102.237 52.980 67.749 0.00 0.00 ATOM 381 O2' RG A2 664 101.132 53.275 68.574 0.00 0.00 ATOM 382 C3' RG A2 664 103.163 54.184 67.581 0.00 0.00 ATOM 383 O3' RG A2 664 103.508 54.816 68.810 0.00 0.00 ATOM 384 P RA A2 665 104.799 54.315 69.612 0.00 0.00 ATOM 385 O1P RA A2 665 105.122 55.347 70.614 0.00 0.00 ATOM 386 O2P RA A2 665 105.823 53.863 68.645 0.00 0.00 ATOM 387 O5' RA A2 665 104.275 52.992 70.339 0.00 0.00 ATOM 388 C5' RA A2 665 103.986 52.889 71.735 0.00 0.00 ATOM 389 C4' RA A2 665 102.679 53.523 72.133 0.00 0.00 ATOM 390 O4' RA A2 665 101.590 53.035 71.295 0.00 0.00 ATOM 391 C1' RA A2 665 100.423 52.751 72.053 0.00 0.00 ATOM 392 N9 RA A2 665 100.395 51.292 72.223 0.00 0.00 ATOM 393 C5 RA A2 665 99.849 49.239 72.802 0.00 0.00 ATOM 394 N7 RA A2 665 101.014 49.155 72.058 0.00 0.00 ATOM 395 C8 RA A2 665 101.307 50.387 71.740 0.00 0.00 ATOM 396 N1 RA A2 665 97.960 48.698 74.066 0.00 0.00 ATOM 397 C2 RA A2 665 97.687 50.005 74.098 0.00 0.00 ATOM 398 N3 RA A2 665 98.363 51.011 73.551 0.00 0.00 ATOM 399 C4 RA A2 665 99.458 50.559 72.913 0.00 0.00 ATOM 400 C6 RA A2 665 99.052 48.255 73.415 0.00 0.00 ATOM 401 N6 RA A2 665 99.326 46.942 73.390 0.00 0.00 ATOM 402 C2' RA A2 665 100.725 53.392 73.435 0.00 0.00 ATOM 403 O2' RA A2 665 100.432 54.779 73.394 0.00 0.00 ATOM 404 C3' RA A2 665 102.221 53.123 73.541 0.00 0.00 ATOM 405 O3' RA A2 665 102.882 53.919 74.522 0.00 0.00 ATOM 406 P RC A2 666 103.154 53.290 75.971 0.00 0.00 ATOM 407 O1P RC A2 666 104.063 54.217 76.665 0.00 0.00 ATOM 408 O2P RC A2 666 103.542 51.861 75.832 0.00 0.00 ATOM 409 O5' RC A2 666 101.723 53.305 76.671 0.00 0.00 ATOM 410 C5' RC A2 666 100.998 54.554 76.787 0.00 0.00 ATOM 411 C4' RC A2 666 99.595 54.267 77.271 0.00 0.00 ATOM 412 O4' RC A2 666 98.983 53.257 76.404 0.00 0.00 ATOM 413 C1' RC A2 666 98.175 52.422 77.205 0.00 0.00 ATOM 414 N1 RC A2 666 98.650 51.031 77.099 0.00 0.00 ATOM 415 C6 RC A2 666 99.857 50.704 76.563 0.00 0.00 ATOM 416 C5 RC A2 666 100.255 49.422 76.477 0.00 0.00 ATOM 417 C2 RC A2 666 97.799 50.034 77.585 0.00 0.00 ATOM 418 O2 RC A2 666 96.692 50.374 78.055 0.00 0.00 ATOM 419 N3 RC A2 666 98.203 48.753 77.531 0.00 0.00 ATOM 420 C4 RC A2 666 99.372 48.417 76.975 0.00 0.00 ATOM 421 N4 RC A2 666 99.698 47.121 76.907 0.00 0.00 ATOM 422 C2' RC A2 666 98.113 53.019 78.596 0.00 0.00 ATOM 423 O2' RC A2 666 97.100 54.015 78.654 0.00 0.00 ATOM 424 C3' RC A2 666 99.519 53.624 78.655 0.00 0.00 ATOM 425 O3' RC A2 666 99.575 54.632 79.652 0.00 0.00 ATOM 426 P RC A2 667 100.523 54.412 80.918 0.00 0.00 ATOM 427 O1P RC A2 667 100.401 55.643 81.727 0.00 0.00 ATOM 428 O2P RC A2 667 101.862 53.938 80.446 0.00 0.00 ATOM 429 O5' RC A2 667 99.874 53.195 81.714 0.00 0.00 ATOM 430 C5' RC A2 667 98.570 53.297 82.311 0.00 0.00 ATOM 431 C4' RC A2 667 98.058 51.915 82.631 0.00 0.00 ATOM 432 O4' RC A2 667 97.935 51.152 81.395 0.00 0.00 ATOM 433 C1' RC A2 667 98.206 49.793 81.656 0.00 0.00 ATOM 434 N1 RC A2 667 99.417 49.403 80.908 0.00 0.00 ATOM 435 C6 RC A2 667 100.272 50.315 80.355 0.00 0.00 ATOM 436 C5 RC A2 667 101.361 49.898 79.693 0.00 0.00 ATOM 437 C2 RC A2 667 99.650 48.027 80.786 0.00 0.00 ATOM 438 O2 RC A2 667 98.821 47.253 81.301 0.00 0.00 ATOM 439 N3 RC A2 667 100.740 47.611 80.126 0.00 0.00 ATOM 440 C4 RC A2 667 101.574 48.496 79.568 0.00 0.00 ATOM 441 N4 RC A2 667 102.652 48.046 78.923 0.00 0.00 ATOM 442 C2' RC A2 667 98.444 49.657 83.171 0.00 0.00 ATOM 443 O2' RC A2 667 97.205 49.423 83.834 0.00 0.00 ATOM 444 C3' RC A2 667 99.001 51.051 83.481 0.00 0.00 ATOM 445 O3' RC A2 667 98.800 51.342 84.857 0.00 0.00 ATOM 446 P RG A2 668 100.076 51.363 85.841 0.00 0.00 ATOM 447 O1P RG A2 668 99.494 51.472 87.193 0.00 0.00 ATOM 448 O2P RG A2 668 101.063 52.309 85.285 0.00 0.00 ATOM 449 O5' RG A2 668 100.722 49.909 85.707 0.00 0.00 ATOM 450 C5' RG A2 668 100.047 48.745 86.222 0.00 0.00 ATOM 451 C4' RG A2 668 100.843 47.526 85.825 0.00 0.00 ATOM 452 O4' RG A2 668 100.806 47.416 84.366 0.00 0.00 ATOM 453 C1' RG A2 668 102.024 46.811 83.963 0.00 0.00 ATOM 454 N9 RG A2 668 102.774 47.757 83.164 0.00 0.00 ATOM 455 C4 RG A2 668 103.882 47.517 82.385 0.00 0.00 ATOM 456 N2 RG A2 668 106.249 45.282 81.143 0.00 0.00 ATOM 457 N3 RG A2 668 104.494 46.329 82.204 0.00 0.00 ATOM 458 C2 RG A2 668 105.544 46.386 81.401 0.00 0.00 ATOM 459 N1 RG A2 668 105.964 47.559 80.796 0.00 0.00 ATOM 460 C6 RG A2 668 105.337 48.771 80.974 0.00 0.00 ATOM 461 O6 RG A2 668 105.787 49.795 80.375 0.00 0.00 ATOM 462 C5 RG A2 668 104.215 48.732 81.836 0.00 0.00 ATOM 463 N7 RG A2 668 103.348 49.721 82.256 0.00 0.00 ATOM 464 C8 RG A2 668 102.497 49.110 83.048 0.00 0.00 ATOM 465 C2' RG A2 668 102.762 46.394 85.236 0.00 0.00 ATOM 466 O2' RG A2 668 102.332 45.115 85.617 0.00 0.00 ATOM 467 C3' RG A2 668 102.330 47.518 86.178 0.00 0.00 ATOM 468 O3' RG A2 668 102.614 47.254 87.555 0.00 0.00 ATOM 469 P RG A2 669 103.921 47.907 88.270 0.00 0.00 ATOM 470 O1P RG A2 669 103.911 47.519 89.700 0.00 0.00 ATOM 471 O2P RG A2 669 103.999 49.345 87.891 0.00 0.00 ATOM 472 O5' RG A2 669 105.155 47.141 87.594 0.00 0.00 ATOM 473 C5' RG A2 669 105.355 45.732 87.747 0.00 0.00 ATOM 474 C4' RG A2 669 106.420 45.284 86.774 0.00 0.00 ATOM 475 O4' RG A2 669 106.056 45.716 85.427 0.00 0.00 ATOM 476 C1' RG A2 669 107.253 46.037 84.731 0.00 0.00 ATOM 477 N9 RG A2 669 107.228 47.400 84.256 0.00 0.00 ATOM 478 C4 RG A2 669 108.142 47.932 83.372 0.00 0.00 ATOM 479 N2 RG A2 669 110.994 47.553 81.397 0.00 0.00 ATOM 480 N3 RG A2 669 109.195 47.291 82.824 0.00 0.00 ATOM 481 C2 RG A2 669 109.909 48.047 82.014 0.00 0.00 ATOM 482 N1 RG A2 669 109.618 49.364 81.748 0.00 0.00 ATOM 483 C6 RG A2 669 108.535 50.031 82.307 0.00 0.00 ATOM 484 O6 RG A2 669 108.353 51.246 81.986 0.00 0.00 ATOM 485 C5 RG A2 669 107.754 49.244 83.186 0.00 0.00 ATOM 486 N7 RG A2 669 106.627 49.528 83.932 0.00 0.00 ATOM 487 C8 RG A2 669 106.338 48.401 84.555 0.00 0.00 ATOM 488 C2' RG A2 669 108.425 45.594 85.582 0.00 0.00 ATOM 489 O2' RG A2 669 108.598 44.194 85.405 0.00 0.00 ATOM 490 C3' RG A2 669 107.801 45.929 86.949 0.00 0.00 ATOM 491 O3' RG A2 669 108.482 45.254 87.989 0.00 0.00 ATOM 492 P RA A2 670 109.470 46.070 88.942 0.00 0.00 ATOM 493 O1P RA A2 670 109.705 45.172 90.096 0.00 0.00 ATOM 494 O2P RA A2 670 108.935 47.433 89.182 0.00 0.00 ATOM 495 O5' RA A2 670 110.818 46.231 88.116 0.00 0.00 ATOM 496 C5' RA A2 670 111.609 45.064 87.793 0.00 0.00 ATOM 497 C4' RA A2 670 112.680 45.437 86.805 0.00 0.00 ATOM 498 O4' RA A2 670 112.085 45.853 85.540 0.00 0.00 ATOM 499 C1' RA A2 670 112.922 46.839 84.961 0.00 0.00 ATOM 500 N9 RA A2 670 112.168 48.084 84.891 0.00 0.00 ATOM 501 C5 RA A2 670 111.532 50.102 84.331 0.00 0.00 ATOM 502 N7 RA A2 670 110.597 49.642 85.257 0.00 0.00 ATOM 503 C8 RA A2 670 111.022 48.440 85.557 0.00 0.00 ATOM 504 N1 RA A2 670 112.693 51.469 82.778 0.00 0.00 ATOM 505 C2 RA A2 670 113.562 50.457 82.652 0.00 0.00 ATOM 506 N3 RA A2 670 113.550 49.272 83.266 0.00 0.00 ATOM 507 C4 RA A2 670 112.506 49.157 84.098 0.00 0.00 ATOM 508 C6 RA A2 670 111.650 51.315 83.626 0.00 0.00 ATOM 509 N6 RA A2 670 110.767 52.306 83.771 0.00 0.00 ATOM 510 C2' RA A2 670 114.181 46.939 85.804 0.00 0.00 ATOM 511 O2' RA A2 670 115.127 45.962 85.422 0.00 0.00 ATOM 512 C3' RA A2 670 113.546 46.646 87.178 0.00 0.00 ATOM 513 O3' RA A2 670 114.602 46.315 88.065 0.00 0.00 ATOM 514 P RG A2 671 115.019 47.240 89.302 0.00 0.00 ATOM 515 O1P RG A2 671 115.907 46.461 90.206 0.00 0.00 ATOM 516 O2P RG A2 671 113.823 47.910 89.859 0.00 0.00 ATOM 517 O5' RG A2 671 115.909 48.357 88.571 0.00 0.00 ATOM 518 C5' RG A2 671 117.141 48.002 87.922 0.00 0.00 ATOM 519 C4' RG A2 671 117.460 48.933 86.788 0.00 0.00 ATOM 520 O4' RG A2 671 116.277 49.250 86.007 0.00 0.00 ATOM 521 C1' RG A2 671 116.482 50.496 85.369 0.00 0.00 ATOM 522 N9 RG A2 671 115.308 51.313 85.633 0.00 0.00 ATOM 523 C4 RG A2 671 115.012 52.508 85.029 0.00 0.00 ATOM 524 N2 RG A2 671 115.818 55.019 82.776 0.00 0.00 ATOM 525 N3 RG A2 671 115.762 53.124 84.094 0.00 0.00 ATOM 526 C2 RG A2 671 115.216 54.264 83.702 0.00 0.00 ATOM 527 N1 RG A2 671 114.027 54.744 84.202 0.00 0.00 ATOM 528 C6 RG A2 671 113.256 54.112 85.159 0.00 0.00 ATOM 529 O6 RG A2 671 112.173 54.651 85.551 0.00 0.00 ATOM 530 C5 RG A2 671 113.818 52.893 85.592 0.00 0.00 ATOM 531 N7 RG A2 671 113.371 51.975 86.528 0.00 0.00 ATOM 532 C8 RG A2 671 114.290 51.049 86.517 0.00 0.00 ATOM 533 C2' RG A2 671 117.809 51.066 85.829 0.00 0.00 ATOM 534 O2' RG A2 671 118.839 50.739 84.913 0.00 0.00 ATOM 535 C3' RG A2 671 117.985 50.316 87.154 0.00 0.00 ATOM 536 O3' RG A2 671 119.378 50.244 87.475 0.00 0.00 ATOM 537 P RU A2 672 119.805 51.211 88.684 0.00 0.00 ATOM 538 O1P RU A2 672 121.175 50.831 89.121 0.00 0.00 ATOM 539 O2P RU A2 672 118.720 51.199 89.685 0.00 0.00 ATOM 540 O5' RU A2 672 119.860 52.658 88.005 0.00 0.00 ATOM 541 C5' RU A2 672 120.831 52.989 87.011 0.00 0.00 ATOM 542 C4' RU A2 672 120.525 54.335 86.394 0.00 0.00 ATOM 543 O4' RU A2 672 119.267 54.219 85.652 0.00 0.00 ATOM 544 C1' RU A2 672 118.546 55.421 85.759 0.00 0.00 ATOM 545 N1 RU A2 672 117.300 55.207 86.508 0.00 0.00 ATOM 546 C6 RU A2 672 117.106 54.177 87.388 0.00 0.00 ATOM 547 C2 RU A2 672 116.313 56.144 86.256 0.00 0.00 ATOM 548 O2 RU A2 672 116.492 57.069 85.493 0.00 0.00 ATOM 549 N3 RU A2 672 115.144 55.948 86.937 0.00 0.00 ATOM 550 C4 RU A2 672 114.905 54.965 87.880 0.00 0.00 ATOM 551 O4 RU A2 672 113.774 54.903 88.370 0.00 0.00 ATOM 552 C5 RU A2 672 115.960 54.012 88.069 0.00 0.00 ATOM 553 C2' RU A2 672 119.449 56.430 86.489 0.00 0.00 ATOM 554 O2' RU A2 672 120.248 57.113 85.550 0.00 0.00 ATOM 555 C3' RU A2 672 120.232 55.465 87.379 0.00 0.00 ATOM 556 O3' RU A2 672 121.419 56.092 87.857 0.00 0.00 ATOM 557 P RG A2 673 121.368 56.895 89.258 0.00 0.00 ATOM 558 O1P RG A2 673 122.755 57.294 89.550 0.00 0.00 ATOM 559 O2P RG A2 673 120.631 56.111 90.270 0.00 0.00 ATOM 560 O5' RG A2 673 120.516 58.201 88.937 0.00 0.00 ATOM 561 C5' RG A2 673 121.009 59.140 87.960 0.00 0.00 ATOM 562 C4' RG A2 673 120.052 60.293 87.848 0.00 0.00 ATOM 563 O4' RG A2 673 118.854 59.833 87.143 0.00 0.00 ATOM 564 C1' RG A2 673 117.776 60.647 87.540 0.00 0.00 ATOM 565 N9 RG A2 673 116.759 59.816 88.178 0.00 0.00 ATOM 566 C4 RG A2 673 115.430 60.162 88.235 0.00 0.00 ATOM 567 N2 RG A2 673 112.858 62.384 87.493 0.00 0.00 ATOM 568 N3 RG A2 673 114.883 61.281 87.721 0.00 0.00 ATOM 569 C2 RG A2 673 113.579 61.334 87.935 0.00 0.00 ATOM 570 N1 RG A2 673 112.876 60.357 88.599 0.00 0.00 ATOM 571 C6 RG A2 673 113.447 59.202 89.127 0.00 0.00 ATOM 572 O6 RG A2 673 112.752 58.330 89.732 0.00 0.00 ATOM 573 C5 RG A2 673 114.837 59.120 88.913 0.00 0.00 ATOM 574 N7 RG A2 673 115.768 58.153 89.274 0.00 0.00 ATOM 575 C8 RG A2 673 116.902 58.610 88.815 0.00 0.00 ATOM 576 C2' RG A2 673 118.314 61.642 88.597 0.00 0.00 ATOM 577 O2' RG A2 673 118.727 62.840 87.972 0.00 0.00 ATOM 578 C3' RG A2 673 119.477 60.830 89.167 0.00 0.00 ATOM 579 O3' RG A2 673 120.435 61.640 89.834 0.00 0.00 END CRYST1 154.396 154.396 154.396 90.00 90.00 90.00 P 1 1 ATOM 1 H5T RG C 1 70.560 123.690 52.060 1.00 0.00 H ATOM 2 O5' RG C 1 71.260 123.700 52.720 1.00 0.00 O ATOM 3 C5' RG C 1 70.910 122.750 53.710 1.00 0.00 C ATOM 4 H5' RG C 1 71.730 122.560 54.440 1.00 0.00 H ATOM 5 H5'' RG C 1 70.120 123.200 54.350 1.00 0.00 H ATOM 6 C4' RG C 1 70.240 121.480 53.110 1.00 0.00 C ATOM 7 H4' RG C 1 69.980 120.760 53.910 1.00 0.00 H ATOM 8 O4' RG C 1 69.080 121.820 52.320 1.00 0.00 O ATOM 9 C1' RG C 1 69.090 121.040 51.240 1.00 0.00 C ATOM 10 H1' RG C 1 68.920 120.000 51.580 1.00 0.00 H ATOM 11 N9 RG C 1 68.130 121.470 50.130 1.00 0.00 N ATOM 12 C4 RG C 1 66.900 120.930 49.810 1.00 0.00 C ATOM 13 N2 RG C 1 64.470 118.530 50.620 1.00 0.00 N ATOM 14 H21 RG C 1 63.500 118.640 50.400 1.00 0.00 H ATOM 15 H22 RG C 1 64.810 118.230 51.510 1.00 0.00 H ATOM 16 N3 RG C 1 66.340 119.970 50.580 1.00 0.00 N ATOM 17 C2 RG C 1 65.150 119.530 50.070 1.00 0.00 C ATOM 18 N1 RG C 1 64.630 120.020 48.820 1.00 0.00 N ATOM 19 H1 RG C 1 63.860 119.470 48.470 1.00 0.00 H ATOM 20 C6 RG C 1 65.250 121.020 48.010 1.00 0.00 C ATOM 21 O6 RG C 1 64.750 121.400 47.040 1.00 0.00 O ATOM 22 C5 RG C 1 66.500 121.420 48.590 1.00 0.00 C ATOM 23 N7 RG C 1 67.440 122.230 48.120 1.00 0.00 N ATOM 24 C8 RG C 1 68.340 122.270 49.060 1.00 0.00 C ATOM 25 H8 RG C 1 69.200 122.940 49.000 1.00 0.00 H ATOM 26 C2' RG C 1 70.530 120.970 50.770 1.00 0.00 C ATOM 27 H2'' RG C 1 70.700 120.150 50.050 1.00 0.00 H ATOM 28 O2' RG C 1 71.080 122.150 50.260 1.00 0.00 O ATOM 29 H2' RG C 1 71.270 122.080 49.320 1.00 0.00 H ATOM 30 C3' RG C 1 71.140 120.740 52.070 1.00 0.00 C ATOM 31 H3' RG C 1 72.120 121.260 52.080 1.00 0.00 H ATOM 32 O3' RG C 1 71.240 119.370 52.430 1.00 0.00 O ATOM 33 P RG C 2 72.640 118.720 52.260 1.00 0.00 P ATOM 34 O1P RG C 2 73.490 118.890 53.510 1.00 0.00 O ATOM 35 O2P RG C 2 73.220 119.190 51.010 1.00 0.00 O ATOM 36 O5' RG C 2 72.380 117.210 51.990 1.00 0.00 O ATOM 37 C5' RG C 2 71.710 116.410 53.090 1.00 0.00 C ATOM 38 H5' RG C 2 71.410 117.090 53.920 1.00 0.00 H ATOM 39 H5'' RG C 2 72.480 115.690 53.440 1.00 0.00 H ATOM 40 C4' RG C 2 70.520 115.640 52.500 1.00 0.00 C ATOM 41 H4' RG C 2 69.960 114.880 53.090 1.00 0.00 H ATOM 42 O4' RG C 2 69.470 116.540 52.080 1.00 0.00 O ATOM 43 C1' RG C 2 68.750 115.870 51.050 1.00 0.00 C ATOM 44 H1' RG C 2 67.810 115.500 51.510 1.00 0.00 H ATOM 45 N9 RG C 2 68.480 116.760 49.910 1.00 0.00 N ATOM 46 C4 RG C 2 67.440 116.650 49.040 1.00 0.00 C ATOM 47 N2 RG C 2 64.330 115.510 48.330 1.00 0.00 N ATOM 48 H21 RG C 2 64.320 114.740 48.970 1.00 0.00 H ATOM 49 H22 RG C 2 63.570 115.640 47.700 1.00 0.00 H ATOM 50 N3 RG C 2 66.400 115.770 49.120 1.00 0.00 N ATOM 51 C2 RG C 2 65.410 116.210 48.340 1.00 0.00 C ATOM 52 N1 RG C 2 65.480 117.240 47.420 1.00 0.00 N ATOM 53 H1 RG C 2 64.670 117.310 46.810 1.00 0.00 H ATOM 54 C6 RG C 2 66.630 118.050 47.240 1.00 0.00 C ATOM 55 O6 RG C 2 66.640 118.930 46.430 1.00 0.00 O ATOM 56 C5 RG C 2 67.630 117.750 48.210 1.00 0.00 C ATOM 57 N7 RG C 2 68.770 118.450 48.490 1.00 0.00 N ATOM 58 C8 RG C 2 69.190 117.900 49.610 1.00 0.00 C ATOM 59 H8 RG C 2 70.050 118.270 50.170 1.00 0.00 H ATOM 60 C2' RG C 2 69.540 114.630 50.550 1.00 0.00 C ATOM 61 H2'' RG C 2 69.600 114.550 49.450 1.00 0.00 H ATOM 62 O2' RG C 2 68.780 113.530 51.060 1.00 0.00 O ATOM 63 H2' RG C 2 68.590 112.950 50.330 1.00 0.00 H ATOM 64 C3' RG C 2 70.910 114.830 51.210 1.00 0.00 C ATOM 65 H3' RG C 2 71.430 115.610 50.590 1.00 0.00 H ATOM 66 O3' RG C 2 71.630 113.560 51.480 1.00 0.00 O ATOM 67 P RU C 3 72.400 112.900 50.350 1.00 0.00 P ATOM 68 O1P RU C 3 73.140 111.790 50.920 1.00 0.00 O ATOM 69 O2P RU C 3 73.150 113.940 49.650 1.00 0.00 O ATOM 70 O5' RU C 3 71.270 112.400 49.370 1.00 0.00 O ATOM 71 C5' RU C 3 70.360 111.310 49.710 1.00 0.00 C ATOM 72 H5' RU C 3 70.080 111.320 50.790 1.00 0.00 H ATOM 73 H5'' RU C 3 70.940 110.360 49.710 1.00 0.00 H ATOM 74 C4' RU C 3 69.200 111.050 48.780 1.00 0.00 C ATOM 75 H4' RU C 3 68.590 110.210 49.150 1.00 0.00 H ATOM 76 O4' RU C 3 68.510 112.280 48.560 1.00 0.00 O ATOM 77 C1' RU C 3 67.820 112.250 47.330 1.00 0.00 C ATOM 78 H1' RU C 3 66.770 112.120 47.660 1.00 0.00 H ATOM 79 N1 RU C 3 67.960 113.590 46.650 1.00 0.00 N ATOM 80 C6 RU C 3 69.190 114.210 46.680 1.00 0.00 C ATOM 81 H6 RU C 3 69.950 113.830 47.350 1.00 0.00 H ATOM 82 C2 RU C 3 66.920 114.000 45.850 1.00 0.00 C ATOM 83 O2 RU C 3 65.850 113.420 45.800 1.00 0.00 O ATOM 84 N3 RU C 3 67.210 115.170 45.190 1.00 0.00 N ATOM 85 H3 RU C 3 66.500 115.420 44.520 1.00 0.00 H ATOM 86 C4 RU C 3 68.480 115.820 45.110 1.00 0.00 C ATOM 87 O4 RU C 3 68.660 116.850 44.430 1.00 0.00 O ATOM 88 C5 RU C 3 69.470 115.230 45.920 1.00 0.00 C ATOM 89 H5 RU C 3 70.410 115.760 45.990 1.00 0.00 H ATOM 90 C2' RU C 3 68.330 111.110 46.450 1.00 0.00 C ATOM 91 H2'' RU C 3 68.610 111.530 45.460 1.00 0.00 H ATOM 92 O2' RU C 3 67.400 110.100 46.290 1.00 0.00 O ATOM 93 H2' RU C 3 67.460 109.820 45.380 1.00 0.00 H ATOM 94 C3' RU C 3 69.570 110.670 47.280 1.00 0.00 C ATOM 95 H3' RU C 3 70.450 111.320 47.070 1.00 0.00 H ATOM 96 O3' RU C 3 69.970 109.310 47.290 1.00 0.00 O ATOM 97 P RU C 4 70.750 108.770 45.980 1.00 0.00 P ATOM 98 O1P RU C 4 71.540 107.550 46.390 1.00 0.00 O ATOM 99 O2P RU C 4 71.320 109.850 45.160 1.00 0.00 O ATOM 100 O5' RU C 4 69.590 108.140 45.120 1.00 0.00 O ATOM 101 C5' RU C 4 68.610 107.120 45.590 1.00 0.00 C ATOM 102 H5' RU C 4 68.240 107.340 46.610 1.00 0.00 H ATOM 103 H5'' RU C 4 69.070 106.110 45.660 1.00 0.00 H ATOM 104 C4' RU C 4 67.390 107.070 44.620 1.00 0.00 C ATOM 105 H4' RU C 4 66.540 106.600 45.140 1.00 0.00 H ATOM 106 O4' RU C 4 66.940 108.410 44.070 1.00 0.00 O ATOM 107 C1' RU C 4 66.470 108.320 42.710 1.00 0.00 C ATOM 108 H1' RU C 4 65.410 108.670 42.730 1.00 0.00 H ATOM 109 N1 RU C 4 67.240 109.120 41.740 1.00 0.00 N ATOM 110 C6 RU C 4 68.590 109.430 41.970 1.00 0.00 C ATOM 111 H6 RU C 4 68.880 109.380 43.020 1.00 0.00 H ATOM 112 C2 RU C 4 66.650 109.310 40.470 1.00 0.00 C ATOM 113 O2 RU C 4 65.620 108.740 40.120 1.00 0.00 O ATOM 114 N3 RU C 4 67.400 110.100 39.670 1.00 0.00 N ATOM 115 H3 RU C 4 66.950 110.470 38.840 1.00 0.00 H ATOM 116 C4 RU C 4 68.670 110.610 39.900 1.00 0.00 C ATOM 117 O4 RU C 4 69.180 111.490 39.170 1.00 0.00 O ATOM 118 C5 RU C 4 69.300 110.180 41.080 1.00 0.00 C ATOM 119 H5 RU C 4 70.160 110.760 41.390 1.00 0.00 H ATOM 120 C2' RU C 4 66.490 106.850 42.460 1.00 0.00 C ATOM 121 H2'' RU C 4 66.790 106.630 41.420 1.00 0.00 H ATOM 122 O2' RU C 4 65.230 106.250 42.760 1.00 0.00 O ATOM 123 H2' RU C 4 65.410 105.310 42.810 1.00 0.00 H ATOM 124 C3' RU C 4 67.560 106.280 43.370 1.00 0.00 C ATOM 125 H3' RU C 4 68.510 106.610 42.890 1.00 0.00 H ATOM 126 O3' RU C 4 67.570 104.880 43.610 1.00 0.00 O ATOM 127 P RC C 5 68.590 103.850 43.050 1.00 0.00 P ATOM 128 O1P RC C 5 69.730 103.640 44.000 1.00 0.00 O ATOM 129 O2P RC C 5 68.910 104.120 41.650 1.00 0.00 O ATOM 130 O5' RC C 5 67.750 102.540 43.010 1.00 0.00 O ATOM 131 C5' RC C 5 66.830 102.110 44.040 1.00 0.00 C ATOM 132 H5' RC C 5 66.800 102.850 44.880 1.00 0.00 H ATOM 133 H5'' RC C 5 67.130 101.120 44.410 1.00 0.00 H ATOM 134 C4' RC C 5 65.380 101.940 43.550 1.00 0.00 C ATOM 135 H4' RC C 5 64.650 101.570 44.300 1.00 0.00 H ATOM 136 O4' RC C 5 64.810 103.220 43.130 1.00 0.00 O ATOM 137 C1' RC C 5 63.850 103.010 42.100 1.00 0.00 C ATOM 138 H1' RC C 5 62.850 103.170 42.550 1.00 0.00 H ATOM 139 N1 RC C 5 64.060 103.860 40.840 1.00 0.00 N ATOM 140 C6 RC C 5 65.310 104.040 40.400 1.00 0.00 C ATOM 141 H6 RC C 5 66.050 103.580 41.060 1.00 0.00 H ATOM 142 C5 RC C 5 65.550 104.780 39.330 1.00 0.00 C ATOM 143 H5 RC C 5 66.530 104.830 38.840 1.00 0.00 H ATOM 144 C2 RC C 5 62.990 104.310 40.120 1.00 0.00 C ATOM 145 O2 RC C 5 61.810 104.110 40.540 1.00 0.00 O ATOM 146 N3 RC C 5 63.200 105.000 38.940 1.00 0.00 N ATOM 147 C4 RC C 5 64.460 105.260 38.610 1.00 0.00 C ATOM 148 N4 RC C 5 64.690 105.970 37.550 1.00 0.00 N ATOM 149 H41 RC C 5 65.590 105.830 37.120 1.00 0.00 H ATOM 150 H42 RC C 5 64.030 106.460 36.980 1.00 0.00 H ATOM 151 C2' RC C 5 63.900 101.550 41.710 1.00 0.00 C ATOM 152 H2'' RC C 5 63.850 101.280 40.630 1.00 0.00 H ATOM 153 O2' RC C 5 62.760 100.950 42.310 1.00 0.00 O ATOM 154 H2' RC C 5 61.940 101.260 41.940 1.00 0.00 H ATOM 155 C3' RC C 5 65.260 101.100 42.230 1.00 0.00 C ATOM 156 H3' RC C 5 66.060 101.400 41.510 1.00 0.00 H ATOM 157 O3' RC C 5 65.340 99.670 42.490 1.00 0.00 O ATOM 158 P RA C 6 65.720 98.820 41.250 1.00 0.00 P ATOM 159 O1P RA C 6 65.950 97.430 41.750 1.00 0.00 O ATOM 160 O2P RA C 6 66.970 99.420 40.660 1.00 0.00 O ATOM 161 O5' RA C 6 64.490 98.810 40.260 1.00 0.00 O ATOM 162 C5' RA C 6 63.270 98.140 40.470 1.00 0.00 C ATOM 163 H5' RA C 6 62.790 98.310 41.460 1.00 0.00 H ATOM 164 H5'' RA C 6 63.520 97.050 40.470 1.00 0.00 H ATOM 165 C4' RA C 6 62.170 98.440 39.430 1.00 0.00 C ATOM 166 H4' RA C 6 61.280 97.860 39.740 1.00 0.00 H ATOM 167 O4' RA C 6 61.790 99.800 39.380 1.00 0.00 O ATOM 168 C1' RA C 6 61.470 100.120 38.040 1.00 0.00 C ATOM 169 H1' RA C 6 60.460 100.590 38.010 1.00 0.00 H ATOM 170 N9 RA C 6 62.280 101.140 37.500 1.00 0.00 N ATOM 171 C5 RA C 6 63.010 102.730 36.230 1.00 0.00 C ATOM 172 N7 RA C 6 64.050 102.530 37.120 1.00 0.00 N ATOM 173 C8 RA C 6 63.530 101.570 37.860 1.00 0.00 C ATOM 174 H8 RA C 6 63.990 101.120 38.730 1.00 0.00 H ATOM 175 N1 RA C 6 61.840 103.640 34.330 1.00 0.00 N ATOM 176 C2 RA C 6 60.860 102.760 34.650 1.00 0.00 C ATOM 177 H2 RA C 6 59.880 103.010 34.220 1.00 0.00 H ATOM 178 N3 RA C 6 60.760 101.930 35.690 1.00 0.00 N ATOM 179 C4 RA C 6 61.940 101.900 36.390 1.00 0.00 C ATOM 180 C6 RA C 6 62.980 103.570 35.050 1.00 0.00 C ATOM 181 N6 RA C 6 64.140 104.170 34.650 1.00 0.00 N ATOM 182 H61 RA C 6 64.130 104.750 33.840 1.00 0.00 H ATOM 183 H62 RA C 6 65.010 103.920 35.070 1.00 0.00 H ATOM 184 C2' RA C 6 61.450 98.840 37.280 1.00 0.00 C ATOM 185 H2'' RA C 6 61.560 98.980 36.180 1.00 0.00 H ATOM 186 O2' RA C 6 60.210 98.260 37.480 1.00 0.00 O ATOM 187 H2' RA C 6 59.620 98.440 36.750 1.00 0.00 H ATOM 188 C3' RA C 6 62.480 98.030 37.990 1.00 0.00 C ATOM 189 H3' RA C 6 63.490 98.480 37.900 1.00 0.00 H ATOM 190 O3' RA C 6 62.310 96.590 37.920 1.00 0.00 O ATOM 191 P RU C 7 63.000 95.880 36.650 1.00 0.00 P ATOM 192 O1P RU C 7 62.340 94.560 36.420 1.00 0.00 O ATOM 193 O2P RU C 7 64.460 95.850 36.860 1.00 0.00 O ATOM 194 O5' RU C 7 62.690 96.750 35.350 1.00 0.00 O ATOM 195 C5' RU C 7 61.360 96.550 34.830 1.00 0.00 C ATOM 196 H5' RU C 7 60.460 96.670 35.470 1.00 0.00 H ATOM 197 H5'' RU C 7 61.360 95.520 34.410 1.00 0.00 H ATOM 198 C4' RU C 7 61.080 97.350 33.540 1.00 0.00 C ATOM 199 H4' RU C 7 60.060 97.090 33.160 1.00 0.00 H ATOM 200 O4' RU C 7 61.100 98.760 33.720 1.00 0.00 O ATOM 201 C1' RU C 7 61.520 99.430 32.550 1.00 0.00 C ATOM 202 H1' RU C 7 60.700 100.140 32.330 1.00 0.00 H ATOM 203 N1 RU C 7 62.740 100.140 32.810 1.00 0.00 N ATOM 204 C6 RU C 7 63.670 99.750 33.720 1.00 0.00 C ATOM 205 H6 RU C 7 63.390 99.060 34.520 1.00 0.00 H ATOM 206 C2 RU C 7 62.990 101.240 32.000 1.00 0.00 C ATOM 207 O2 RU C 7 62.210 101.730 31.130 1.00 0.00 O ATOM 208 N3 RU C 7 64.160 101.890 32.290 1.00 0.00 N ATOM 209 H3 RU C 7 64.320 102.640 31.630 1.00 0.00 H ATOM 210 C4 RU C 7 65.240 101.430 33.060 1.00 0.00 C ATOM 211 O4 RU C 7 66.360 102.040 33.040 1.00 0.00 O ATOM 212 C5 RU C 7 64.890 100.370 33.850 1.00 0.00 C ATOM 213 H5 RU C 7 65.670 100.010 34.530 1.00 0.00 H ATOM 214 C2' RU C 7 61.620 98.400 31.430 1.00 0.00 C ATOM 215 H2'' RU C 7 62.410 98.740 30.730 1.00 0.00 H ATOM 216 O2' RU C 7 60.380 98.240 30.850 1.00 0.00 O ATOM 217 H2' RU C 7 60.470 98.400 29.910 1.00 0.00 H ATOM 218 C3' RU C 7 62.030 97.200 32.290 1.00 0.00 C ATOM 219 H3' RU C 7 63.080 97.290 32.670 1.00 0.00 H ATOM 220 O3' RU C 7 61.760 95.970 31.680 1.00 0.00 O ATOM 221 P RG C 8 62.690 95.300 30.630 1.00 0.00 P ATOM 222 O1P RG C 8 62.100 94.000 30.310 1.00 0.00 O ATOM 223 O2P RG C 8 64.020 95.310 31.230 1.00 0.00 O ATOM 224 O5' RG C 8 62.720 96.170 29.330 1.00 0.00 O ATOM 225 C5' RG C 8 61.670 96.210 28.350 1.00 0.00 C ATOM 226 H5' RG C 8 60.670 96.300 28.840 1.00 0.00 H ATOM 227 H5'' RG C 8 61.650 95.260 27.760 1.00 0.00 H ATOM 228 C4' RG C 8 61.840 97.480 27.410 1.00 0.00 C ATOM 229 H4' RG C 8 60.980 97.490 26.700 1.00 0.00 H ATOM 230 O4' RG C 8 61.880 98.810 28.160 1.00 0.00 O ATOM 231 C1' RG C 8 62.790 99.560 27.480 1.00 0.00 C ATOM 232 H1' RG C 8 62.260 100.530 27.360 1.00 0.00 H A

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srdjan125 Sep 28, 2021
Author

I am attaching them now
RNA_previous.txt
RNA.txt

srdjan125 · 2021-09-30T12:46:20Z

srdjan125
Sep 30, 2021
Author

Hello, Is there any update why online webserver is not working anymore to convert RNA PDB file into PQR? Did something changed in the meantime and residue names need to be different?

…

________________________________ From: Nathan Baker ***@***.***> Sent: Tuesday, September 28, 2021 4:28 PM To: Electrostatics/apbs ***@***.***> Cc: srdjan125 ***@***.***>; Author ***@***.***> Subject: Re: [Electrostatics/apbs] PDB2PQR webserver not working for RNA molecules (with residue names RA, RC, RU, RG) (Discussion #175) Can you please attach an example PDB file (you'll need to change the suffix of the file to .txt to upload)? Thanks. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#175 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AUJN6QP7Z5K6A7IJQYXU4EDUEHGKXANCNFSM5E5N2JDA>. Triage notifications on the go with GitHub Mobile for iOS<https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android<https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

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sobolevnrm · 2021-10-01T01:36:41Z

sobolevnrm
Oct 1, 2021
Maintainer

The version of PDB2PQR used by the webserver has changed over the past few months. Unfortunately, we have not had time to investigate the problem with the current version of the server. However, it is on our "todo" list.

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PDB2PQR webserver not working for RNA molecules (with residue names RA, RC, RU, RG) #175

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PDB2PQR webserver not working for RNA molecules (with residue names RA, RC, RU, RG) #175

srdjan125 Sep 28, 2021

Replies: 4 comments · 1 reply

sobolevnrm Sep 28, 2021 Maintainer

srdjan125 Sep 28, 2021 Author

srdjan125 Sep 28, 2021 Author

srdjan125 Sep 30, 2021 Author

sobolevnrm Oct 1, 2021 Maintainer

srdjan125
Sep 28, 2021

Replies: 4 comments 1 reply

sobolevnrm
Sep 28, 2021
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srdjan125
Sep 28, 2021
Author

srdjan125 Sep 28, 2021
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srdjan125
Sep 30, 2021
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sobolevnrm
Oct 1, 2021
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