Merge pull request #5 from EarthScope/test-nb

update library to latest

Dockerfile

@@ -3,7 +3,7 @@ FROM ghcr.io/earthscope/strain-scipy-notebook
 WORKDIR /home/jovyan/
 LABEL authors = "Mike Gottlieb, Earthscope Inc. [email protected]"
 
-RUN pip install 'earthscopestraintools[mseed,tiledb]'==0.1.19
+RUN pip install 'earthscopestraintools[mseed,tiledb]'==0.1.34
 
 RUN mkdir examples/
 COPY notebooks/level2.ipynb examples/level2.ipynb

build_docker.sh

@@ -28,6 +28,7 @@ docker run \
         -it \
         -p 8888:8888 \
         --name='strain-processing-notebooks-container' \
+        -v ${PWD}/notebooks:/home/jovyan/notebooks \
         ghcr.io/earthscope/strain-processing-notebooks
         #-v ${PWD}/notebooks:/home/jovyan/notebooks \
 

notebooks/earthscopestraintools-access.ipynb

@@ -0,0 +1,106 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from earthscopestraintools.mseed_tools import ts_from_mseed\n",
+    "from earthscopestraintools.gtsm_metadata import GtsmMetadata\n",
+    "\n",
+    "import logging\n",
+    "logger = logging.getLogger()\n",
+    "logging.basicConfig(\n",
+    "        format=\"%(message)s\", level=logging.INFO\n",
+    "    )"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "network = \n",
+    "station = \n",
+    "location = \n",
+    "channel = \n",
+    "start=\"2023-11-01T00:00:00\"\n",
+    "end = \"2023-11-08T00:00:00\"\n",
+    "\n",
+    "meta = GtsmMetadata(network,station)\n",
+    "meta.show()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "strain_raw = ts_from_mseed(network=network, \n",
+    "                           station=station, \n",
+    "                           location=location, \n",
+    "                           channel=channel,\n",
+    "                           start=start, \n",
+    "                           end=end)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "strain_raw.stats()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "strain_raw.data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "strain_raw.plot()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.10"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}

notebooks/obspy-access.ipynb

@@ -0,0 +1,92 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from obspy.clients.fdsn import Client\n",
+    "from obspy import UTCDateTime\n",
+    "\n",
+    "client = Client(\"IRIS\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "network = \n",
+    "station = \n",
+    "location = \n",
+    "channel = \n",
+    "start = UTCDateTime(\"2023-11-01T00:00:00\")\n",
+    "end  = UTCDateTime(\"2023-11-08T00:00:00\")\n",
+    "st = client.get_waveforms(network=network,\n",
+    "                          station=station, \n",
+    "                          location=location,\n",
+    "                          channel=channel,\n",
+    "                          starttime=start,\n",
+    "                          endtime=end)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "st"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "for tr in st:\n",
+    "    print(tr.data)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "result = st.plot()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.10"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}

run_docker.sh

@@ -17,7 +17,7 @@ docker run \
         -it \
         -p 8888:8888 \
         --name='strain-processing-notebooks' \
- 	      -v ${PWD}/notebooks:/home/jovyan/notebooks \
+ 	-v ${PWD}/notebooks:/home/jovyan/notebooks \
         ghcr.io/earthscope/strain-processing-notebooks
 
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