add pre-commit config #112
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ['**'] | |
| paths-ignore: | |
| - '**/*.md' | |
| pull_request: {branches: [main]} | |
| defaults: {run: {shell: 'bash -el {0}'}} # https://github.com/marketplace/actions/setup-miniconda#important | |
| env: | |
| YARDL_VERSION: 0.6.2 | |
| jobs: | |
| validate: | |
| strategy: | |
| matrix: | |
| cppVersion: [17] | |
| environment: pypi | |
| permissions: {id-token: write} | |
| name: Validate Python and C++${{ matrix.cppVersion }} and deploy to PyPI | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: {submodules: recursive} | |
| - name: strip environment.yml | |
| run: | | |
| cat environment.yml | grep -v "#.*\<\local\>" > temp-ci-environment.yml | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: yardl | |
| environment-file: temp-ci-environment.yml | |
| - name: Install yardl | |
| run: | | |
| rm temp-ci-environment.yml | |
| gh release download -R microsoft/yardl -p '*linux_x86_64.tar.gz' v$YARDL_VERSION | |
| mkdir yardl | |
| tar -xzf "yardl_${YARDL_VERSION}_linux_x86_64.tar.gz" -C yardl | |
| rm "yardl_${YARDL_VERSION}_linux_x86_64.tar.gz" | |
| echo "$PWD/yardl" >> "$GITHUB_PATH" | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| - name: Build model | |
| run: | | |
| cd model | |
| yardl generate | |
| - name: Python | |
| run: | | |
| cd python | |
| python petsird_generator.py | python petsird_analysis.py | |
| - name: cpp | |
| run: | | |
| mkdir cpp/build | |
| cd cpp/build | |
| cmake -G Ninja -S .. -DHDF5_ROOT="$CONDA_PREFIX" | |
| ninja | |
| ./petsird_generator test.h5 | |
| ./petsird_analysis test.h5 | |
| - name: Copy LICENSE for deployment | |
| run: | | |
| cp LICENSE.txt python/LICENSE | |
| cp LICENSE.txt cpp/LICENSE | |
| - uses: casperdcl/deploy-pypi@v2 | |
| with: | |
| build: python -o dist | |
| upload: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-petsird | |
| path: dist/** |