avoid integer overflow by skipping mediator in restart loop #334
Workflow file for this run
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| # CIME scripts regression tests | |
| name: scripts regression tests | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events but only for the main branch | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ 3.10.9 ] | |
| env: | |
| CC: mpicc | |
| FC: mpifort | |
| CXX: mpicxx | |
| CPPFLAGS: "-I/usr/include -I/usr/local/include " | |
| LDFLAGS: "-L/usr/lib/x86_64-linux-gnu -lnetcdf -lnetcdff -lpnetcdf" | |
| # Versions of all dependencies can be updated here | |
| ESMF_VERSION: v8.6.0 | |
| PARALLELIO_VERSION: pio2_6_2 | |
| CIME_MODEL: cesm | |
| CIME_DRIVER: nuopc | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: Setup Ubuntu Environment | |
| id: load-env | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get install libxml2-utils | |
| sudo apt-get install netcdf-bin | |
| sudo apt-get install libnetcdf-dev | |
| sudo apt-get install libnetcdff-dev | |
| sudo apt-get install pnetcdf-bin | |
| sudo apt-get install libpnetcdf-dev | |
| sudo apt-get install doxygen | |
| sudo apt-get install graphviz | |
| sudo apt-get install wget | |
| sudo apt-get install gfortran | |
| sudo apt-get install libjpeg-dev | |
| sudo apt-get install libz-dev | |
| sudo apt-get install openmpi-bin | |
| sudo apt-get install libopenmpi-dev | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: echo "PyYAML" > requirements.txt | |
| - name: Install PyYAML | |
| run: pip install -r requirements.txt | |
| # use the latest cesm main | |
| - name: cesm checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ESCOMP/CESM | |
| path: cesm | |
| # this cmeps commit | |
| - name: cmeps checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: cesm/components/cmeps | |
| # Checkout cesm datamodels and support | |
| # cpl7 is needed - i think that's a bug | |
| - name: checkout externals | |
| run: | | |
| pushd cesm | |
| ./manage_externals/checkout_externals ccs_config cdeps share mct cpl7 parallelio | |
| cd ccs_config | |
| git checkout main | |
| cd ../ | |
| git clone https://github.com/ESMCI/cime | |
| cd cime | |
| if [[ ! -e "${PWD}/.gitmodules.bak" ]] | |
| then | |
| echo "Converting [email protected] to https://github.com urls in ${PWD}/.gitmodules" | |
| sed -i".bak" "s/[email protected]:/https:\/\/github.com\//g" "${PWD}/.gitmodules" | |
| fi | |
| git submodule update --init | |
| cd ../components/cdeps | |
| git checkout main | |
| - name: Cache ESMF | |
| id: cache-esmf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/ESMF | |
| key: ${{ runner.os }}-${{ env.ESMF_VERSION }}-ESMF1 | |
| # - name: cache pnetcdf | |
| # id: cache-pnetcdf | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: ~/pnetcdf | |
| # key: ${{ runner.os }}-${{ env.PNETCDF_VERSION}}-pnetcdf | |
| # - name: Cache netcdf-fortran | |
| # id: cache-netcdf-fortran | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: ~/netcdf-fortran | |
| # key: ${{ runner.os }}-${{ env.NETCDF_FORTRAN_VERSION }}-netcdf-fortran | |
| - name: Cache ParallelIO | |
| id: cache-ParallelIO | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/pio | |
| key: ${{ runner.os }}-${{ env.PARALLELIO_VERSION }}.parallelio | |
| - name: Cache inputdata | |
| id: cache-inputdata | |
| uses: actions/cache@v3 | |
| with: | |
| path: $HOME/cesm/inputdata | |
| key: inputdata | |
| # - name: Build PNetCDF | |
| # if: steps.cache-pnetcdf.outputs.cache-hit != 'true' | |
| # uses: ESCOMP/CDEPS/.github/actions/buildpnetcdf@e06246b560d3132170bb1a5443fa3d65dfbd2040 | |
| # with: | |
| # pnetcdf_version: ${{ env.PNETCDF_VERSION }} | |
| # install_prefix: $HOME/pnetcdf | |
| # - name: Build NetCDF Fortran | |
| # if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true' | |
| # uses: ESCOMP/CDEPS/.github/actions/buildnetcdff@e06246b560d3132170bb1a5443fa3d65dfbd2040 | |
| # with: | |
| # netcdf_fortran_version: ${{ env.NETCDF_FORTRAN_VERSION }} | |
| # install_prefix: $HOME/netcdf-fortran | |
| # netcdf_c_path: /usr | |
| - name: Build ParallelIO | |
| if: steps.cache-PARALLELIO.outputs.cache-hit != 'true' | |
| uses: NCAR/ParallelIO/.github/actions/parallelio_cmake@05173a6556ea8d80eb34e3881a5014ea8f4b7543 | |
| with: | |
| parallelio_version: ${{ env.ParallelIO_VERSION }} | |
| enable_fortran: True | |
| install_prefix: /home/runner/pio | |
| - name: Build ESMF | |
| if: steps.cache-esmf.outputs.cache-hit != 'true' | |
| uses: ESCOMP/CDEPS/.github/actions/buildesmf@e06246b560d3132170bb1a5443fa3d65dfbd2040 | |
| with: | |
| esmf_version: ${{ env.ESMF_VERSION }} | |
| esmf_bopt: g | |
| esmf_comm: openmpi | |
| install_prefix: ~/ESMF | |
| netcdf_c_path: /usr | |
| netcdf_fortran_path: /usr | |
| pnetcdf_path: /usr | |
| parallelio_path: ~/pio | |
| - name: PREP for scripts regression test | |
| run: | | |
| mkdir -p $HOME/cesm/scratch | |
| mkdir -p $HOME/cesm/inputdata | |
| pushd $GITHUB_WORKSPACE/cesm/cime/CIME/tests | |
| export SRCROOT=$GITHUB_WORKSPACE/cesm/ | |
| export CIME_TEST_PLATFORM=ubuntu-latest | |
| export PIO_INCDIR=$HOME/pio/include | |
| export PIO_LIBDIR=$HOME/pio/lib | |
| export PIO_VERSION_MAJOR=2 | |
| export PIO_TYPENAME_VALID_VALUES="netcdf,pnetcdf" | |
| export NETCDF_PATH=/usr | |
| export PNETCDF_PATH=/usr | |
| export LD_LIBRARY_PATH=/usr/lib/libx86_64-linux-gnu/:$LD_LIBRARY_PATH | |
| export ESMFMKFILE=$HOME/ESMF/lib/libg/Linux.gfortran.64.openmpi.default/esmf.mk | |
| cat <<EOF >> $GITHUB_WORKSPACE/cesm/ccs_config/machines/cmake_macros/ubuntu-latest.cmake | |
| set(NetCDF_Fortran_INCLUDE_DIR /usr/include) | |
| set(NetCDF_Fortran_LIBRARY /usr/lib/x86_64-gnu-Linux/libnetcdff.so) | |
| EOF | |
| printenv >> $GITHUB_ENV | |
| popd | |
| - name: scripts regression tests | |
| run: | | |
| pushd $GITHUB_WORKSPACE/cesm/cime/CIME/tests | |
| ./scripts_regression_tests.py --no-fortran-run --compiler gnu --mpilib openmpi --machine ubuntu-latest | |
| popd | |
| # the following can be used by developers to login to the github server in case of errors | |
| # see https://github.com/marketplace/actions/debugging-with-tmate for further details | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 |