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Refactor PackageDependencies property (#9803)
* Refactor PackageDependencies property * Add test to verify multiple packages not listed as dependencies for one node * Keep original package dependency by default and add API to void original package dependency * Add comment * Move helper methods out of properties region * Fix IsLoaded logic * Update test .dyn to avoid serialization test failures * Exclude new dyn from serialization tests * Use preexisting method to exclude test dyn from serialization tests
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