Attempt to fix warnings; changed description of gridref_regions rda f…

…ile to gridref_regions instead of test
DylanCarbone · Apr 8, 2024 · eac3f8f · eac3f8f
1 parent e71345b
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Showing 8 changed files with 3,543 additions and 6 deletions.
diff --git a/.gitignore b/.gitignore
@@ -14,4 +14,3 @@ sparta.Rproj
 misc/
 /doc/
 /Meta/
-inst/doc
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -41,7 +41,8 @@ Imports:
     plyr,
     reshape2,
     rmarkdown,
-    sp
+    sp,
+    xfun (>= 0.4.3)
 Suggests:
     knitr,
     R2jags,

diff --git a/R/plot_DetectionOverTime.R b/R/plot_DetectionOverTime.R
@@ -4,8 +4,8 @@
 
 #' @param model a fitted sparta model of class \code{OccDet}.
 #' @param spname optional name of the species (used for plotting)
-#' @param bins number of points to estimate across the year. Defaults to 12
-#' @param density_function whether the model used a density function to fit Julian date. This form was implemented from version 0.1.48 onwards. For models ran using earlier versions of the package this should be set to FALSE
+#' @param min.yr Minimum year for the detection (e.g., 1990).
+#' @param CI Confidence interval
 #' 
 #' @details 
 #' Takes a object of \code{OccDet}

diff --git a/data/gridref_regions.rda b/data/gridref_regions.rda
diff --git a/inst/doc/sparta_vignette.R b/inst/doc/sparta_vignette.R
@@ -0,0 +1 @@
+
-Original file line number
+Diff line change
@@ Expand Up / @@ -14,4 +14,3 @@ sparta.Rproj @@
     misc/
     /doc/
     /Meta/
-    inst/doc