Merged recent changes from 'main' branch. #259

	name: Build and test

	on: [push, pull_request]

	permissions:
	contents: read

	jobs:
	build:
	name: Build package
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.11
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"
	- name: Install pypa/build
	run: >-
	python3 -m
	pip install
	build
	--user
	- name: Build python package
	run: python3 -m build

	test:
	name: Build distribution and run tests
	runs-on: ubuntu-latest
	needs:
	- build

	strategy:
	matrix:
	python-version: ["3.10", "3.11", "3.12"]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	pip install pytest pytest-cov pytest-mock pytest-datafiles
	pip install .

	- name: Install fork of CCP-EM pipeliner
	run: \|
	git clone -b diamond_tomo --single-branch https://gitlab.com/stephen-riggs/ccpem-pipeliner.git
	pip install ./ccpem-pipeliner

	- name: Test with pytest
	run: \|
	PYTHONDEVMODE=1 pytest -v -ra --cov=cryoemservices --cov-report=xml --cov-branch tests

	- name: Upload to Codecov
	uses: codecov/codecov-action@v4
	with:
	name: ${{ matrix.python-version }}
	files: coverage.xml
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	continue-on-error: true
	timeout-minutes: 2

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