avoid name collision, fix argument names

DessimozLab · Nov 12, 2024 · b4efc51 · b4efc51
1 parent 9635aa9
commit b4efc51
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/modules/local/cache_builder/main.nf b/modules/local/cache_builder/main.nf
@@ -57,7 +57,7 @@ process COMBINE_JOBS {
     container "dessimozlab/omabuild:nf-latest"
 
     input:
-        path(job_res)
+        path(job_res, stageAs: "res???/*")
 
     output:
         path("cache.h5"), emit: cache_h5
@@ -73,4 +73,4 @@ process COMBINE_JOBS {
         """ 
         touch cache.h5
         """
-}
+}
diff --git a/modules/local/go_import/main.nf b/modules/local/go_import/main.nf
@@ -21,11 +21,11 @@ process GO_IMPORT {
             --out ./GO.h5 \\
             --tax-map $tax_map \\
             --obo $obo \\
-            --gafs $gaf \\
+            --gaf $gaf \\
         """
 
     stub:
         """
         touch GO.h5
         """
-}
+}
diff --git a/nextflow.config b/nextflow.config
@@ -23,7 +23,7 @@ params {
     xref_refseq = null     //null -> download from refseq; folder -> files with gpff.gz to process
 
     // gene ontology
-    go_obo = "https://purl.obolibrary.org/obo/go/go-basic.obo"
+    go_obo = "http://purl.obolibrary.org/obo/go/go-basic.obo"
     go_gaf = "https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz"
 
     // OMA Browser data directory