madroot err

DessimozLab · Apr 11, 2024 · 12024d0 · 12024d0
1 parent a5edbb8
commit 12024d0
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Showing 4 changed files with 3 additions and 1 deletion.
diff --git a/3diphy b/3diphy
diff --git a/src/__pycache__/AFDB_tools.cpython-310.pyc b/src/__pycache__/AFDB_tools.cpython-310.pyc
diff --git a/src/__pycache__/foldseek2tree.cpython-310.pyc b/src/__pycache__/foldseek2tree.cpython-310.pyc
diff --git a/workflow/fold_tree b/workflow/fold_tree
@@ -27,7 +27,7 @@ rule mad_root_post:
 		#"config/fold_tree.yaml"
 		"foldtree"
 	input:
-		"{folder}/{mattype}_struct_tree.PP.nwk"
+		"{folder}/{mattype}_struct_tree.PP.nwk.rooted"
 	output:
 		"{folder}/{mattype}_struct_tree.PP.nwk.rooted.final"
 	log:
@@ -102,6 +102,7 @@ rule foldseek_allvall_1:
 	shell:
 		foldseekpath + " easy-search {wildcards.folder}/structs/ {wildcards.folder}/structs/ {wildcards.folder}/allvall_1.csv {wildcards.folder}/tmp --format-output 'query,target,fident,alnlen,mismatch,gapopen,qstart,qend,tstart,tend,evalue,bits,lddt,lddtfull,alntmscore' --exhaustive-search --alignment-type 2 -e inf --threads " + str(config['foldseek_cores']) 
 
+
 rule dl_ids_sequences:
 	conda: 
 		#"config/fold_tree.yaml"