AttributeError: 'NoneType' object has no attribute 'get_legend_handles_labels

[Yohana-Berhe]

I am ingest workflow in a multiome data. however, the panpipes ingest aborts with an error when it reaches 'run_scanpyQC_atac.py ' script. The error I get is:

sc.pl.violin(atac, qc_vars_plot,
File "/miniconda3/envs/pipeline_env/lib/python3.9/site-packages/scanpy/plotting/_anndata.py", line 795, in violin

g = sns.catplot(
File "/seaborn/categorical.py", line 2932, in catplot
p.plot_violins(
File "/seaborn/categorical.py", line 1153, in plot_violi
ns
self._configure_legend(ax, legend_artist, common_kws)
File "/seaborn/categorical.py", line 420, in configure
legend
handles, _ = ax.get_legend_handles_labels()
AttributeError: 'NoneType' object has no attribute 'get_legend_handles_labels' \

[bio-la]

Hi @Yohana-Berhe, thanks for opening this issue! so i can replicate the issue,
can you post here the results of pip freeze in your panpipes environment? thank you!

[Yohana-Berhe]

panpipes_dependencies.txt

[bio-la]

solved with PR #128
to apply the latest changes to your environment please clone the panpipes repo and follow the instructions on installing nightly versions of panpipes !