CI on pull request #265
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| name: CI on pull request | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '15 2 * * TUE' # Also run the full test suite for PRs on the main branch every Tuesday night | |
| jobs: | |
| lint-and-format: | |
| name: Lint and check formatting | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - uses: pre-commit/[email protected] | |
| run-full-test-suite: | |
| name: Run full test suite | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| singularity: [ | |
| {provider: "singularity", version: "3.8.7"}, | |
| {provider: "apptainer", version: "1.1.3"}, | |
| {provider: "apptainer", version: "1.3.4"}, | |
| {provider: "singularity-ce", version: "3.9.2"}, | |
| {provider: "singularity-ce", version: "4.1.3"}, | |
| {provider: "singularity-ce", version: "4.2.1"} | |
| ] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Attempt to restore Singularity/Apptainer installer from cache | |
| uses: actions/cache@v3 | |
| id: cache-singularity-installer | |
| with: | |
| path: ./singularity_installer.deb | |
| key: ${{ matrix.os }}-${{ matrix.singularity.provider }}_installer-${{ matrix.singularity.version }} | |
| - name: Download Singularity ${{ matrix.singularity.version }} | |
| if: ${{ steps.cache-singularity-installer.outputs.cache-hit != 'true' && matrix.singularity.provider == 'singularity' }} | |
| run: wget -O singularity_installer.deb https://github.com/apptainer/singularity/releases/download/v${{ matrix.singularity.version }}/singularity-container_${{ matrix.singularity.version }}_amd64.deb | |
| - name: Download Apptainer ${{ matrix.singularity.version }} | |
| if: ${{ steps.cache-singularity-installer.outputs.cache-hit != 'true' && matrix.singularity.provider == 'apptainer' }} | |
| run: wget -O singularity_installer.deb https://github.com/apptainer/apptainer/releases/download/v${{ matrix.singularity.version }}/apptainer_${{ matrix.singularity.version }}_amd64.deb | |
| - name: Download SingularityCE ${{ matrix.singularity.version }} | |
| if: ${{ steps.cache-singularity-installer.outputs.cache-hit != 'true' && matrix.singularity.provider == 'singularity-ce' }} | |
| run: wget -O singularity_installer.deb https://github.com/sylabs/singularity/releases/download/v${{ matrix.singularity.version }}/singularity-ce_${{ matrix.singularity.version }}-focal_amd64.deb | |
| - name: Set up Singularity/Apptainer | |
| run: | | |
| sudo apt install ./singularity_installer.deb | |
| singularity --version | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: "**/test-requirements.txt" | |
| - name: Install test dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install -r test-requirements.txt | |
| - name: Run test suite via pytest | |
| run: pytest -vv --junitxml=pytest_junit_out.xml | |
| - name: Archive the test results and coverage | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-results-and-coverage_python${{ matrix.python-version }}_${{ matrix.singularity.provider }}${{ matrix.singularity.version }} | |
| path: | | |
| pytest_junit_out.xml | |
| htmlcov/* |