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Merge pull request #75 from jsoishi/master
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Remove bitbucket from install script; use pip instead
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@kburns
kburns authored May 30, 2020
2 parents fd2af6e + 7f8c799 commit 449f7c3
Showing 1 changed file with 11 additions and 41 deletions.
52 changes: 11 additions & 41 deletions docs/install.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -180,7 +180,6 @@ function host_specific
echo "Looks like you're running on Mac OSX."
echo
echo "NOTE: you must have the Xcode command line tools installed."
echo "You also need install mercurial (https://www.mercurial-scm.org/downloads), and gfortran (https://gcc.gnu.org/wiki/GFortranBinaries#MacOS)"
echo
echo "The instructions for obtaining the Xcode tools varies according"
echo "to your exact OS version. On older versions of OS X, you"
Expand Down Expand Up @@ -261,7 +260,6 @@ function host_specific
echo
echo " * atlas"
echo " * atlas-devel"
echo " * mercurial"
echo " * openmpi"
echo " * openssl-devel"
echo " * ncurses"
Expand All @@ -285,7 +283,7 @@ function host_specific
echo
echo "You can accomplish this by executing:"
echo
echo "$ sudo yum install atlas atlas-devel openmpi openmpi-devel openssl openssl-devel ncurses ncurses-devel zip uuid uuid-devel freetype freetype-devel tk tk-devel hdf5 hdf5-devel libpng-devel mercurial sqlite sqlite-devel gcc-gfortran gcc-c++"
echo "$ sudo yum install atlas atlas-devel openmpi openmpi-devel openssl openssl-devel ncurses ncurses-devel zip uuid uuid-devel freetype freetype-devel tk tk-devel hdf5 hdf5-devel libpng-devel sqlite sqlite-devel gcc-gfortran gcc-c++"
echo
echo "Some of these packages may require access to EPEL (extra packages for enterprise linux), and you'll need optional packages enabled."
echo
Expand All @@ -308,7 +306,6 @@ function host_specific
echo "You need to have these packages installed:"
echo
echo " * libatlas-base-dev"
echo " * mercurial"
echo " * libatlas3-base"
echo " * libopenmpi-dev"
echo " * openmpi-bin"
Expand All @@ -333,9 +330,9 @@ function host_specific
echo
if [ $UBUNTU_VERSION -lt 17 ]
then
echo "$ sudo apt-get install libatlas-base-dev libatlas3-base libopenmpi-dev openmpi-bin libssl-dev build-essential libncurses5 libncurses5-dev zip uuid-dev libfreetype6-dev tk-dev libhdf5-dev mercurial libzmq-dev libsqlite3-dev gfortran libbz2-dev"
echo "$ sudo apt-get install libatlas-base-dev libatlas3-base libopenmpi-dev openmpi-bin libssl-dev build-essential libncurses5 libncurses5-dev zip uuid-dev libfreetype6-dev tk-dev libhdf5-dev libzmq-dev libsqlite3-dev gfortran libbz2-dev"
else
echo "$ sudo apt-get install libatlas-base-dev libatlas3-base libopenmpi-dev openmpi-bin libssl-dev build-essential libncurses5 libncurses5-dev zip uuid-dev libfreetype6-dev tk-dev libhdf5-dev mercurial libsqlite3-dev gfortran libbz2-dev"
echo "$ sudo apt-get install libatlas-base-dev libatlas3-base libopenmpi-dev openmpi-bin libssl-dev build-essential libncurses5 libncurses5-dev zip uuid-dev libfreetype6-dev tk-dev libhdf5-dev libsqlite3-dev gfortran libbz2-dev"
fi
echo
echo
Expand All @@ -361,7 +358,6 @@ function host_specific
echo
echo " * libbz2-dev"
echo " * libatlas-base-dev"
echo " * mercurial"
echo " * libatlas3-base"
echo " * libopenmpi-dev"
echo " * openmpi-bin"
Expand All @@ -379,7 +375,7 @@ function host_specific
echo
echo "You can accomplish this by executing:"
echo
echo "$ sudo apt-get install libbz2-dev libatlas-base-dev libatlas3-base libopenmpi-dev openmpi-bin libssl-dev build-essential libncurses5 libncurses5-dev zip uuid-dev libfreetype6-dev tk-dev libhdf5-dev mercurial libsqlite3-dev gfortran"
echo "$ sudo apt-get install libbz2-dev libatlas-base-dev libatlas3-base libopenmpi-dev openmpi-bin libssl-dev build-essential libncurses5 libncurses5-dev zip uuid-dev libfreetype6-dev tk-dev libhdf5-dev libsqlite3-dev gfortran"
echo
echo
echo "You're running Debian $DEBIAN_VERSION"
Expand Down Expand Up @@ -811,46 +807,20 @@ then
( ${DEST_DIR}/bin/pip3 install jinja2 2>&1 ) 1>> ${LOG_FILE} || do_exit

fi
# We assume that hg can be found in the path.
if type -P hg &>/dev/null
then
export HG_EXEC=hg
else
echo "Cannot find mercurial. Please make sure it is installed."
do_exit
fi

if [ -z "$DEDALUS_DIR" ]
then
DEDALUS_DIR="$PWD/dedalus/"
if [ ! -e dedalus ]
then
( ${HG_EXEC} --debug clone https://bitbucket.org/dedalus-project/dedalus/ dedalus 2>&1 ) 1>> ${LOG_FILE}

# Now we update to the branch we're interested in.
( ${HG_EXEC} -R ${DEDALUS_DIR} up -C ${BRANCH} 2>&1 ) 1>> ${LOG_FILE}
fi
echo Setting DEDALUS_DIR=${DEDALUS_DIR}
fi

echo "pip installing Dedalus"
${DEST_DIR}/bin/pip3 install dedalus

## afterwards
# Add the environment scripts
( cp ${DEDALUS_DIR}/docs/activate ${DEST_DIR}/bin/activate 2>&1 ) 1>> ${LOG_FILE}
${GETFILE} "https://raw.githubusercontent.com/DedalusProject/dedalus/master/docs/activate" || do_exit
( cp ${DEST_DIR}/src/activate ${DEST_DIR}/bin/activate 2>&1 ) 1>> ${LOG_FILE}

sed -i.bak -e "s,__DEDALUS_DIR__,${DEST_DIR}," ${DEST_DIR}/bin/activate
( cp ${DEDALUS_DIR}/docs/activate.csh ${DEST_DIR}/bin/activate.csh 2>&1 ) 1>> ${LOG_FILE}
( cp ${DEST_DIR}/src/activate.csh ${DEST_DIR}/bin/activate.csh 2>&1 ) 1>> ${LOG_FILE}
${GETFILE} "https://raw.githubusercontent.com/DedalusProject/dedalus/master/docs/activate.csh" || do_exit
sed -i.bak -e "s,__DEDALUS_DIR__,${DEST_DIR}," ${DEST_DIR}/bin/activate.csh

echo "Doing Dedalus update, wiping local changes and updating to branch ${BRANCH}"
MY_PWD=`pwd`
cd $DEDALUS_DIR
( ${HG_EXEC} pull 2>1 && ${HG_EXEC} up -C 2>1 ${BRANCH} 2>&1 ) 1>> ${LOG_FILE}

echo "Installing Dedalus"
( export PATH=$DEST_DIR/bin:$PATH ; ${DEST_DIR}/bin/python3 setup.py build_ext --inplace 2>&1 ) 1>> ${LOG_FILE} || do_exit
touch done
cd $MY_PWD

if !( ( ${DEST_DIR}/bin/python3 -c "import readline" 2>&1 )>> ${LOG_FILE})
then
echo "Installing pure-python readline"
Expand Down

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