chore: Change entity and component logic to use bitstream references #1468
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Change to references from raw pointers.
Note: For your sanity, there are no unrelated changes in this or the other PRs. I specifically want to make that clear here given the sheer volume of files touched. The only changes included are those needed to make these pointers references. I have done my absolute best to keep these chunks as small as possible, but this one is huge despite my best efforts.