The dataRetrieval package was created to simplify the process of
loading hydrologic data into the R environment. It is designed to
retrieve the major data types of U.S. Geological Survey (USGS) hydrology
data that are available on the Web, as well as data from the Water
Quality Portal (WQP), which currently houses water quality data from the
Environmental Protection Agency (EPA), U.S. Department of Agriculture
(USDA), and USGS. Direct USGS data is obtained from a service called the
National Water Information System (NWIS).
library(remotes)
install_github("DOI-USGS/dataRetrieval",
build_vignettes = TRUE,
build_opts = c("--no-resave-data",
"--no-manual"))If you have additional questions about these changes, email [email protected].
-
Get instantaneous USGS discharge data. Start here:
?readNWISuv -
Get daily USGS discharge data. Start here:
?readNWISdv -
Get USGS groundwater data. Start here:
?readNWISgwl -
Get discrete water quality data. Start here:
?readWQPdata -
Discover USGS data (not including discrete water quality data). Start here:
?whatNWISdata -
Find Hydro Network-Linked Data Index (NLDI) data. Start here:
?findNLDI
For additional tutorials, see:
To install the dataRetrieval package, you must be using R 3.0 or
greater and run the following command:
install.packages("dataRetrieval")To get cutting-edge changes, install from GitHub using the remotes
packages:
library(remotes)
install_github("DOI-USGS/dataRetrieval",
build_vignettes = TRUE,
build_opts = c("--no-resave-data",
"--no-manual"))Please consider reporting bugs and asking questions on the Issues page: https://github.com/DOI-USGS/dataRetrieval/issues
citation(package = "dataRetrieval")
#> To cite dataRetrieval in publications, please use:
#>
#> De Cicco, L.A., Hirsch, R.M., Lorenz, D., Watkins, W.D., Johnson, M.,
#> 2024, dataRetrieval: R packages for discovering and retrieving water
#> data available from Federal hydrologic web services, v.2.7.17,
#> doi:10.5066/P9X4L3GE
#>
#> A BibTeX entry for LaTeX users is
#>
#> @Manual{,
#> author = {Laura DeCicco and Robert Hirsch and David Lorenz and Jordan Read and Jordan Walker and Lindsay Platt and David Watkins and David Blodgett and Mike Johnson and Aliesha Krall and Lee Stanish},
#> title = {dataRetrieval: R packages for discovering and retrieving water data available from U.S. federal hydrologic web services},
#> publisher = {U.S. Geological Survey},
#> address = {Reston, VA},
#> version = {2.7.17},
#> institution = {U.S. Geological Survey},
#> year = {2024},
#> doi = {10.5066/P9X4L3GE},
#> url = {https://code.usgs.gov/water/dataRetrieval},
#> }U.S. Geological Survey, 2023, National Water Information System data available on the World Wide Web (USGS Water Data for the Nation), accessed [April 26, 2023], at http://waterdata.usgs.gov/nwis/. http://dx.doi.org/10.5066/F7P55KJN
This can be done using the create_NWIS_bib function:
dv <- readNWISdv("09010500", "00060")
NWIScitation <- create_NWIS_bib(dv)
NWIScitation
#> U.S. Geological Survey (2024). _National Water Information System data
#> available on the World Wide Web (USGS Water Data for the Nation)_.
#> doi:10.5066/F7P55KJN <https://doi.org/10.5066/F7P55KJN>, Accessed Oct
#> 23, 2024,
#> <https://waterservices.usgs.gov/nwis/dv/?site=09010500&format=waterml,1.1&ParameterCd=00060&StatCd=00003&startDT=1851-01-01>.
print(NWIScitation, style = "Bibtex")
#> @Manual{,
#> title = {National Water Information System data available on the World Wide Web (USGS Water Data for the Nation)},
#> author = {{U.S. Geological Survey}},
#> doi = {10.5066/F7P55KJN},
#> note = {Accessed Oct 23, 2024},
#> year = {2024},
#> url = {https://waterservices.usgs.gov/nwis/dv/?site=09010500&format=waterml,1.1&ParameterCd=00060&StatCd=00003&startDT=1851-01-01},
#> }Citations for specific datasets should use this format:
National Water Quality Monitoring Council, YYYY, Water Quality Portal, accessed mm, dd, yyyy, hyperlink_for_query, https://doi.org/10.5066/P9QRKUVJ.
This can be done using the create_WQP_bib function:
SC <- readWQPqw(siteNumbers = "USGS-05288705",
parameterCd = "00300")
WQPcitation <- create_WQP_bib(SC)
WQPcitation
#> National Water Quality Monitoring Council (2024). _Water Quality
#> Portal_. doi:10.5066/P9QRKUVJ <https://doi.org/10.5066/P9QRKUVJ>,
#> Accessed Oct 23, 2024,
#> <https://www.waterqualitydata.us/data/Result/search?siteid=USGS-05288705&pCode=00300&mimeType=csv>.
print(WQPcitation, style = "Bibtex")
#> @Manual{,
#> title = {Water Quality Portal},
#> author = {{National Water Quality Monitoring Council}},
#> doi = {10.5066/P9QRKUVJ},
#> note = {Accessed Oct 23, 2024},
#> year = {2024},
#> url = {https://www.waterqualitydata.us/data/Result/search?siteid=USGS-05288705&pCode=00300&mimeType=csv},
#> }General Water Quality Portal citations should use the following:
Water Quality Portal. Washington (DC): National Water Quality Monitoring Council, United States Geological Survey (USGS), Environmental Protection Agency (EPA); 2021. https://doi.org/10.5066/P9QRKUVJ.
The Water Mission Area of the USGS supports the development and
maintenance of dataRetrieval, and most likely further into the future.
Resources are available primarily for maintenance and responding to user
questions. Priorities on the development of new features are determined
by the dataRetrieval development team. This software was last released
with USGS record: IP-147158.
This software is preliminary or provisional and is subject to revision. It is being provided to meet the need for timely best science. The software has not received final approval by the U.S. Geological Survey (USGS). No warranty, expressed or implied, is made by the USGS or the U.S. Government as to the functionality of the software and related material nor shall the fact of release constitute any such warranty. The software is provided on the condition that neither the USGS nor the U.S. Government shall be held liable for any damages resulting from the authorized or unauthorized use of the software.
