Fix DICOM WSI Conversion (#104) #618
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| name: CI | |
| on: | |
| push: | |
| pull_request: | |
| release: | |
| types: | |
| - published | |
| env: | |
| MINIMUM_PYTHON_VERSION: '3.8' | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| precommit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Install Python ${{ env.MINIMUM_PYTHON_VERSION }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.MINIMUM_PYTHON_VERSION }} | |
| - uses: actions/checkout@v3 | |
| - name: Install pre-commit | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pre-commit virtualenv!=20.0.6 | |
| pre-commit install | |
| - name: Run static code inspections | |
| run: pre-commit run --all-files | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install vips and openslide | |
| run: sudo apt-get update && sudo apt-get install -yq libvips-dev libopenslide-dev | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install poetry tox tox-gh-actions | |
| - name: Test with tox | |
| run: | | |
| tox | |
| deploy: | |
| if: github.event_name == 'release' | |
| needs: [precommit, build] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Install Python ${{ env.MINIMUM_PYTHON_VERSION }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.MINIMUM_PYTHON_VERSION }} | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install poetry | |
| - name: Upload to pypi | |
| env: | |
| POETRY_PYPI_TOKEN_PYPI: ${{ secrets.POETRY_PYPI_TOKEN_PYPI }} | |
| run: | | |
| poetry publish --build |