update environment and lock files

[tsnow03]

Copying the environment from the hub-image repo and adding a lock file. The old lock file isn't working and package updates for jupyter book will be really nice to have.

[github-actions]

👈 Launch a binder notebook on this branch

[weiji14]

@tsnow03, is this just syncing the CryoCloudWebsite's environment.yml file with the one at https://github.com/CryoInTheCloud/hub-image/blob/13c06aff40c93435f0b7c44d02e74f24e381b02a/environment.yml?

[tsnow03]

I'd like to. I'm not actually getting a lock file that builds properly. I'll work on this tomorrow.

[weiji14]

Are you getting the same error as in conda/conda-lock#292? Might need to downgrade to conda=22.9.

[tsnow03]

I'm using conda=4.13.0. I was able to build the new conda lock file, but using conda env create --name cryocloud --file conda-linux-64.lock.yml will not create a new environment.

Solving environment: failed

ResolvePackageNotFound: 
  - nss==3.78=h2350873_0
  - kealib==1.4.15=ha7026e8_1
  - postgresql==14.5=ha105346_1
  - xorg-libxau==1.0.9=h7f98852_0
  - blosc==1.21.1=h83bc5f7_3
  - icu==70.1=h27087fc_0
  - kiwisolver==1.4.4=py39hf939315_1
  - libgfortran-ng==12.2.0=h69a702a_19
  - ....

[weiji14]

I'm using conda=4.13.0. I was able to build the new conda lock file, but using conda env create --name cryocloud --file conda-linux-64.lock.yml will not create a new environment.

Hmm, conda=4.13.0 is a little old now (released 20 May 2022). Maybe try updaing it using conda update -n base conda and try again?

Looking through the packages you listed like nss, kealib, postgresql, etc. It seems that the conda=4.13.0 is picking up slightly older versions which are packaged using the .tar.bz2 archive format, even though conda-forge has moved to the a more lightweight .conda format by default now (see conda-forge/conda-forge.github.io#1586). Still, I don't see why you wouldn't be able to install either of them with conda=4.13.0 (would maybe ask @scottyhq), but maybe updating your conda installer to a 22.* version can help 🤷