Eliminate duplicate multideps from modules #122
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| # documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions | |
| name: Tests for the 'eb' command | |
| on: [push, pull_request] | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| concurrency: | |
| group: ${{format('{0}:{1}:{2}', github.repository, github.ref, github.workflow)}} | |
| cancel-in-progress: true | |
| jobs: | |
| test-eb: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python: [2.7, 3.5, 3.6, 3.7, 3.8, 3.9, '3.10', '3.11'] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{matrix.python}} | |
| architecture: x64 | |
| - name: install OS & Python packages | |
| run: | | |
| # check Python version | |
| python -V | |
| # update to latest pip, check version | |
| pip install --upgrade pip | |
| pip --version | |
| # for modules tool | |
| APT_PKGS="lua5.2 liblua5.2-dev lua-filesystem lua-posix tcl tcl-dev" | |
| # Avoid apt-get update, as we don't really need it, | |
| # and it does more harm than good (it's fairly expensive, and it results in flaky test runs) | |
| if ! sudo apt-get install $APT_PKGS; then | |
| # Try to update cache, then try again to resolve 404s of old packages | |
| sudo apt-get update -yqq || true | |
| sudo apt-get install $APT_PKGS | |
| fi | |
| # fix for lua-posix packaging issue, see https://bugs.launchpad.net/ubuntu/+source/lua-posix/+bug/1752082 | |
| # needed for Ubuntu 18.04, but not for Ubuntu 20.04, so skipping symlinking if posix.so already exists | |
| if [ ! -e /usr/lib/x86_64-linux-gnu/lua/5.2/posix.so ] ; then | |
| sudo ln -s /usr/lib/x86_64-linux-gnu/lua/5.2/posix_c.so /usr/lib/x86_64-linux-gnu/lua/5.2/posix.so | |
| fi | |
| - name: install modules tool | |
| run: | | |
| # avoid downloading modules tool sources into easybuild-framework dir | |
| cd $HOME | |
| export INSTALL_DEP=$GITHUB_WORKSPACE/easybuild/scripts/install_eb_dep.sh | |
| # install Lmod | |
| source $INSTALL_DEP Lmod-8.7.6 $HOME | |
| # changes in environment are not passed to other steps, so need to create files... | |
| echo $MOD_INIT > mod_init | |
| echo $PATH > path | |
| if [ ! -z $MODULESHOME ]; then echo $MODULESHOME > moduleshome; fi | |
| - name: install EasyBuild framework | |
| run: | | |
| # install from source distribution tarball, to test release as published on PyPI | |
| python setup.py sdist | |
| ls dist | |
| export PREFIX=/tmp/$USER/$GITHUB_SHA | |
| pip install --prefix $PREFIX dist/easybuild-framework*tar.gz | |
| - name: run tests for 'eb' command | |
| env: | |
| EB_VERBOSE: 1 | |
| run: | | |
| # run tests *outside* of checked out easybuild-framework directory, | |
| # to ensure we're testing installed version (see previous step) | |
| cd $HOME | |
| # initialize environment for modules tool | |
| if [ -f $HOME/moduleshome ]; then export MODULESHOME=$(cat $HOME/moduleshome); fi | |
| source $(cat $HOME/mod_init); type module | |
| # make sure 'eb' is available via $PATH, and that $PYTHONPATH is set (some tests expect that); | |
| # also pick up changes to $PATH set by sourcing $MOD_INIT | |
| export PREFIX=/tmp/$USER/$GITHUB_SHA | |
| export PATH=$PREFIX/bin:$(cat $HOME/path) | |
| export PYTHONPATH=$PREFIX/lib/python${{matrix.python}}/site-packages:$PYTHONPATH | |
| # run --version, capture (verbose) output | |
| eb --version | tee eb_version.out 2>&1 | |
| # determine active Python version | |
| pymajver=$(python -c 'import sys; print(sys.version_info[0])') | |
| pymajminver=$(python -c 'import sys; print(".".join(str(x) for x in sys.version_info[:2]))') | |
| # check patterns in verbose output | |
| for pattern in "^>> Considering .python.\.\.\." "^>> .python. version: ${pymajminver}\.[0-9]\+, which matches Python ${pymajver} version requirement" "^>> 'python' is able to import 'easybuild.framework', so retaining it" "^>> Selected Python command: python \(.*/bin/python\)" "^This is EasyBuild 4\.[0-9.]\+"; do | |
| echo "Looking for pattern \"${pattern}\" in eb_version.out..." | |
| grep "$pattern" eb_version.out | |
| done | |
| if grep -q "Considering ''" eb_version.out; then | |
| echo '`eb` did wrongly consider an empty command' | |
| false | |
| fi | |
| # also check when specifying Python command via $EB_PYTHON | |
| for eb_python in "python${pymajver}" "python${pymajminver}"; do | |
| export EB_PYTHON="${eb_python}" | |
| eb --version | tee eb_version.out 2>&1 | |
| for pattern in "^>> Considering .${eb_python}.\.\.\." "^>> .${eb_python}. version: ${pymajminver}\.[0-9]\+, which matches Python ${pymajver} version requirement" "^>> '${eb_python}' is able to import 'easybuild.framework', so retaining it" "^>> Selected Python command: ${eb_python} \(.*/bin/${eb_python}\)" "^This is EasyBuild 4\.[0-9.]\+"; do | |
| echo "Looking for pattern \"${pattern}\" in eb_version.out..." | |
| grep "$pattern" eb_version.out | |
| done | |
| done |