Fix bug introdued with new memory environment variables #1309
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I hacked this logic (#1283, #1292) in when struggling with some T2T alignments on Slurm, but clearly didn't test it enough since it completely broke cactus on AWS/MESOS. The reason is that it's using (and int-casting)
options.maxMemory
andoptions.defaultMemory
from Toil, which default toNone
on AWS/MESOS (but not single machine and slurm where I was testing).Anyway, this PR should fix it, buy handling None values (and making sure that passed-in values are properly parsed).