Merge pull request #1226 from ComparativeGenomicsToolkit/docker-fixes

remove os.remove before deleteGlobalFile
ComparativeGenomicsToolkit · Nov 15, 2023 · 2343a84 · 2343a84
2 parents ee0517f + cb36454
commit 2343a84
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/src/cactus/paf/local_alignment.py b/src/cactus/paf/local_alignment.py
@@ -138,7 +138,6 @@ def merge_combined_chunks(job, combined_chunks):
             chunk_path = job.fileStore.readGlobalFile(chunk, mutable=True)
             with open(chunk_path, 'r') as chunk_file:
                 shutil.copyfileobj(chunk_file, output_file)
-            os.remove(chunk_path)
             job.fileStore.deleteGlobalFile(chunk)
     return job.fileStore.writeGlobalFile(output_path)