Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: minor text changes in the device documentation part #357

Merged
merged 3 commits into from
Aug 20, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc-ms.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ Please take care that you communicate [name conventions](../../devices#name-conv
Data conversion is coordinated by the Batch's settings configurations.

In LabSolutions Realtime Analysis enter the Batch Table tab, then expand the "Batch" menu and choose "Settings...".
In the "File Conversion" tab activate the check boxes of of each file type the data is to be converted to.
In the "File Conversion" tab activate the check boxes of each file type the data is to be converted to.
The converted files will be named according to the original sample's name.

For conversions into ASCII format additional considerations are required. In the ASCII Conversion tab of the Batch's settings window activate the "Export ASCII File(s)" check box.
Expand Down
2 changes: 1 addition & 1 deletion docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ Please take care that you communicate [name conventions](../../devices#name-conv
Data conversion is coordinated by the Batch's settings configurations.

In LabSolutions Realtime Analysis enter the Realtime Batch tab, then expand the "Batch" menu and choose "Settings...".
In the "File Conversion" tab activate the check boxes of of each file type the data is to be converted to.
In the "File Conversion" tab activate the check boxes of each file type the data is to be converted to.
The converted files will be named according to the original sample's name.

For conversions into ASCII format additional considerations are required. In the ASCII Conversion tab of the Batch's settings window activate the "Export ASCII File(s)" check box.
Expand Down
2 changes: 1 addition & 1 deletion docs/eln/devices/hplc_lc-ms/shimadzu_labsolutions.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ Please take care that you communicate [name conventions](../../devices#name-conv
Data conversion is coordinated by the Batch's settings configurations.

In LabSolutions Realtime Analysis enter the Realtime Batch tab, then expand the "Batch" menu and choose "Settings...".
In the "File Conversion" tab activate the check boxes of of each file type the data is to be converted to.
In the "File Conversion" tab activate the check boxes of each file type the data is to be converted to.
The converted files will be named according to the original sample's name.

For conversions into ASCII format additional considerations are required. In the ASCII Conversion tab of the Batch's settings window activate the "Export ASCII File(s)" check box.
Expand Down
45 changes: 15 additions & 30 deletions docs/eln/devices/nmr/bruker_topspin.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -11,12 +11,6 @@ Operating system: CentOS Linux Release 7.2.1511 (Core)
TopSpin: Version 3.5
IconNMR: Version 5.0.6 Build 32

:::info

Please take care that you communicate [name conventions]([naming convention](../../devices#name-conventions)) to all users of the Chemotion ELN.

:::

**Requirements:**
Local instance of the Chemotion ELN and administrator privileges. Administrator privileges
for the PC’s operating system, for TopSpin and for IconNMR. For remote access to
Expand Down Expand Up @@ -50,22 +44,14 @@ Enter “Advanced …” -> select Permissions -> shared (check), forever (check

### File Transfer Setup TopSpin:

**TopSpin Configurations:**A shared network storage location needs to be made
available to the NMR’s PC and the Chemotion ELN. This can either be set up on a
third-party (a NAS server, another PC’s shared storage, etc.) or it can be set
up locally on the NMR’s PC. For this guide the KIT’s LSDF service was used. If a
third-party service is used the network location needs to be mounted in Linux.
For this guide the LSDF folder was mounted into the home directory of the NMR’s
PC using the KIT LSDF’s SMB Samba server. In TopSpin change to the “Publish tab
and select the dropdown of the “Mobile” option. Choose “configure” and set the
following settings: (herein described are the minimum configurations that need
to be set, depending on your local requirements further adaptations might need
to be necessary).
**TopSpin Configurations:** A shared network storage location needs to be made available to the NMR’s PC and the Chemotion ELN. This can either be set up on a third-part (a NAS server, another PC’s shared storage, etc.) or it can be set up locally on the NMR’s PC. For this guide the KIT’s LSDF service was used. If a third-party service is used the network location needs to be mounted in Linux. For this guide the LSDF folder was mounted into the home directory of the NMR’s PC using the KIT LSDF’s SMB Samba server. In TopSpin change to the “Publish tab and select the dropdown of the “Mobile” option. Choose “configure” and set the following settings: (herein described are the minimum configurations that need to be set, depending on your local requirements further adaptations might need to be necessary).

![device_NMR_2](/img/device_NMR_2.png)

Select what files are to be included in the file transfer and set a desired project name. Select the File System folder option and insert the local path of the network storage mounted in Linux. Finally click on “Save as default”.
After an experiment finished acquiring go to the “Publish” tab and select the “Mobile” option. The data will now be transferred to the network storage location for pickup by the Chemotion ELN’s data collector.
Select what files are to be included in the file transfer and set a desired project name. Select the File System folder
option and insert the local path of the network storage mounted in Linux. Finally click on “Save as default”.
After an experiment finished acquiring go to the “Publish” tab and select the “Mobile” option. The data will now be
transferred to the network storage location for pickup by the Chemotion ELN’s data collector.

**Configuration of Chemotion ELN’s data collector:**

Expand All @@ -77,14 +63,14 @@ After an experiment finished acquiring go to the “Publish” tab and select th

### File Transfer Setup IconNMR:

**IconNMR Configurations:**
Data transfer via mail client (data is sent as email attachment) from IconNMR to
the Chemotion ELN can be set up when the Chemotion ELN’s email address is added as
recipient to the IconNMR user settings. This method requires every user setting up
their experiment under their own account. In the user’s setting (Options -> Configuration
-> User Settings -> User Manager -> [select user]) enter the user’s email address
(this needs to be the same address used to register to the Chemotion ELN) and the
Chemotion ELN’s email address in “Target Email Address” in the following format:
**IconNMR Configurations:** Data transfer via mail client (data is sent as email
attachment) from IconNMR to the Chemotion ELN can be set up when the Chemotion ELN’s
email address is added as recipient to the IconNMR user settings. This method requires
every user setting up their experiment under their own account. In the user’s setting
(Options -> Configuration -> User Settings -> User Manager -> [select user]) enter
the user’s email address (this needs to be the same address used to register to the
Chemotion ELN) and the Chemotion ELN’s email address in “Target Email Address” in
the following format:

```sh
Expand All @@ -97,9 +83,8 @@ Under “Permissions” select ZIP DataMail and if desired JDX DataMail.

![device_NMR_3](/img/device_NMR_3.png)

**Config Chemotion ELN’s data collector:**
The Chemotion ELN's data collector has to be configured to collect emails with NMR
data attachments.
**Config Chemotion ELN’s data collector:** The Chemotion ELN's data collector
has to be configured to collect emails with NMR data attachments.

:::note[Links]

Expand Down
2 changes: 0 additions & 2 deletions docs/eln/devices/nmr/magritek_spinsolve.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -35,8 +35,6 @@ For the NMR integration, we have decided to configure both these features.

## Remote Device Control

## Remote Device Control

:::info

General guideline regarding the configurations of remote device control can be found [here](../configurations/remote_control).
Expand Down