Python package #419
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - release/** | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| - release/** | |
| schedule: | |
| - cron: "0 0 * * 0" | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup conda | |
| uses: s-weigand/setup-conda@v1 | |
| with: | |
| update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| conda-channels: anaconda, conda-forge | |
| - name: Install dependencies | |
| run: | | |
| conda install pip setuptools | |
| conda install --file requirements.txt | |
| conda install --file test_requirements.txt | |
| pre-commit install | |
| - name: Install gwpopulation | |
| run: | | |
| pip install . | |
| - name: List installed | |
| run: | | |
| conda list | |
| - name: Run pre-commit checks | |
| run: | | |
| pre-commit run --all-files --verbose --show-diff-on-failure | |
| jupyter nbconvert --clear-output --inplace examples/*.ipynb | |
| git reset --hard | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov gwpopulation -ra --color yes --cov-report=xml --junitxml=pytest.xml | |
| - name: Publish coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage.xml | |
| flags: python${{ matrix.python-version }} | |
| - name: Coverage report | |
| run: python -m coverage report --show-missing | |
| - name: Upload test results | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pytest-${{ matrix.python-version }} | |
| path: pytest.xml |