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  1. pinellolab/CRISPR-millipede-target Public

    Calculate the enrichment scores of CRISPR alleles and variants from direct target amplicon-sequencing data using Bayesian linear regression model "millipede".

    Jupyter Notebook 1

  2. pinellolab/CRISPR-Correct Public

    Perform CRISPR guide mapping and analysis that considers protospace self-editing and surrogate sensor sequences. Self-editing aware mapping takes a hamming-distance approach unbiased by expectation…

    Python 2

  3. CRISPR-shrinkage Public

    Jupyter Notebook

  4. rna_mutect_cloud Public

    Call somatic variants in bulk RNA-seq data in the cloud

    WDL 2

  5. CRISPR-library-prep Public

    Some helper functions for planning library prep for CRISPR screens

    Jupyter Notebook

  6. CRISPR-SURF Public

    Forked from pinellolab/CRISPR-SURF

    Python