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Harvard Medical School
- Boston, MA
- www.basheerbecerra.com
Highlights
- Pro
Pinned Loading
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pinellolab/CRISPR-millipede-target
pinellolab/CRISPR-millipede-target PublicCalculate the enrichment scores of CRISPR alleles and variants from direct target amplicon-sequencing data using Bayesian linear regression model "millipede".
Jupyter Notebook 1
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pinellolab/CRISPR-Correct
pinellolab/CRISPR-Correct PublicPerform CRISPR guide mapping and analysis that considers protospace self-editing and surrogate sensor sequences. Self-editing aware mapping takes a hamming-distance approach unbiased by expectation…
Python 2
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rna_mutect_cloud
rna_mutect_cloud PublicCall somatic variants in bulk RNA-seq data in the cloud
WDL 2
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CRISPR-library-prep
CRISPR-library-prep PublicSome helper functions for planning library prep for CRISPR screens
Jupyter Notebook
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