Add project toml and add uv to build · Clinical-Genomics/genmod@fcb32e9

Triggered via pull request November 28, 2024 16:38

dnil

ready_for_review #153

uv_hatchling_it

Status Failure

Total duration 17s

Artifacts –

lint.yml

on: pull_request

10 errors

Ruff (F841): genmod/annotate_models/genetic_models.py#L106

genmod/annotate_models/genetic_models.py:106:9: F841 Local variable `compound_pairs` is assigned to but never used

Ruff (F841): genmod/annotate_models/genetic_models.py#L335

genmod/annotate_models/genetic_models.py:335:9: F841 Local variable `mother_phenotype` is assigned to but never used

Ruff (F841): genmod/annotate_models/genetic_models.py#L340

genmod/annotate_models/genetic_models.py:340:9: F841 Local variable `father_phenotype` is assigned to but never used

Ruff (F841): genmod/annotate_variants/annotate.py#L20

genmod/annotate_variants/annotate.py:20:5: F841 Local variable `ref` is assigned to but never used

Ruff (E722): genmod/annotate_variants/read_tabix_files.py#L48

genmod/annotate_variants/read_tabix_files.py:48:5: E722 Do not use bare `except`

Ruff (F821): genmod/commands/analyze.py#L99

genmod/commands/analyze.py:99:32: F821 Undefined name `compound_dict`

Ruff (F821): genmod/commands/analyze.py#L100

genmod/commands/analyze.py:100:16: F821 Undefined name `compounds`

Ruff (F821): genmod/commands/analyze.py#L224

genmod/commands/analyze.py:224:12: F821 Undefined name `compounds`

Ruff (F841): genmod/commands/analyze.py#L268

genmod/commands/analyze.py:268:5: F841 Local variable `de_novo_set` is assigned to but never used

Process completed with exit code 1.