Add project toml and add uv to build #18
dnilAnnotations
10 errors
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Ruff (F841):
genmod/annotate_models/genetic_models.py#L106
genmod/annotate_models/genetic_models.py:106:9: F841 Local variable `compound_pairs` is assigned to but never used
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Ruff (F841):
genmod/annotate_models/genetic_models.py#L335
genmod/annotate_models/genetic_models.py:335:9: F841 Local variable `mother_phenotype` is assigned to but never used
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Ruff (F841):
genmod/annotate_models/genetic_models.py#L340
genmod/annotate_models/genetic_models.py:340:9: F841 Local variable `father_phenotype` is assigned to but never used
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Ruff (F841):
genmod/annotate_regions/parse_annotations.py#L87
genmod/annotate_regions/parse_annotations.py:87:5: F841 Local variable `genes` is assigned to but never used
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Ruff (F401):
genmod/annotate_variants/__init__.py#L3
genmod/annotate_variants/__init__.py:3:31: F401 `.read_tabix_files.get_cadd_scores` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
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Ruff (F401):
genmod/annotate_variants/__init__.py#L3
genmod/annotate_variants/__init__.py:3:48: F401 `.read_tabix_files.get_cosmic` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
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Ruff (F401):
genmod/annotate_variants/__init__.py#L3
genmod/annotate_variants/__init__.py:3:60: F401 `.read_tabix_files.get_frequencies` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
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Ruff (F401):
genmod/annotate_variants/__init__.py#L3
genmod/annotate_variants/__init__.py:3:77: F401 `.read_tabix_files.get_spidex_score` imported but unused; consider removing, adding to `__all__`, or using a redundant alias
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Ruff (F841):
genmod/annotate_variants/annotate.py#L20
genmod/annotate_variants/annotate.py:20:5: F841 Local variable `ref` is assigned to but never used
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Ruff (E722):
genmod/annotate_variants/read_tabix_files.py#L48
genmod/annotate_variants/read_tabix_files.py:48:5: E722 Do not use bare `except`
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