Add docs and ci skeleton

.github/workflows/ci.yml

@@ -0,0 +1,48 @@
+name: ci
+on:
+  push:
+    branches:
+      - main
+      - trying
+      - staging
+    tags: '*'
+  pull_request:
+
+jobs:
+  test:
+    name: ci ${{ matrix.version }} - ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.5'
+          - '1.6.0'
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          - windows-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v1
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info

.github/workflows/docs.yml

@@ -0,0 +1,26 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+      - main
+      - trying
+      - staging
+    tags: '*'
+  pull_request:
+
+jobs:
+  docbuild:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: 1.6.0
+      - name: Install dependencies
+        run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+      - name: Build and deploy
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key
+        run: julia --project=docs/ docs/make.jl

Project.toml

@@ -1,6 +1,6 @@
 name = "TurbulenceConvection"
 uuid = "8e072fc4-01f8-44fb-b9dc-f9336c367e6b"
-authors = ["Charles Kawczynski <[email protected]>"]
+authors = ["Climate Modeling Alliance"]
 version = "0.1.0"
 
 [deps]

README.md

@@ -1,5 +1,25 @@
 # TurbulenceConvection.jl #
 
+|||
+|---------------------:|:----------------------------------------------|
+| **Docs Build**       | [![docs build][docs-bld-img]][docs-bld-url]   |
+| **Documentation**    | [![dev][docs-dev-img]][docs-dev-url]          |
+| **GHA CI**           | [![gha ci][gha-ci-img]][gha-ci-url]           |
+| **Bors enabled**     | [![bors][bors-img]][bors-url]                 |
+
+[docs-bld-img]: https://github.com/CliMA/TurbulenceConvection.jl/actions/workflows/docs.yml/badge.svg
+[docs-bld-url]: https://github.com/CliMA/TurbulenceConvection.jl/actions/workflows/docs.yml
+
+[docs-dev-img]: https://img.shields.io/badge/docs-dev-blue.svg
+[docs-dev-url]: https://CliMA.github.io/TurbulenceConvection.jl/dev/
+
+[gha-ci-img]: https://github.com/CliMA/TurbulenceConvection.jl/actions/workflows/ci.yml/badge.svg
+[gha-ci-url]: https://github.com/CliMA/TurbulenceConvection.jl/actions/workflows/ci.yml
+
+[bors-img]: https://bors.tech/images/badge_small.svg
+[bors-url]: https://app.bors.tech/repositories/35146
+
+
 TurbulenceConvection (Single Column Atmospheric Model in Julia) provides a framework for testing parameterizations of clouds and turbulence.
 It is particularly designed to support eddy-diffusivity mass-flux modeling frameworks.
 

bors.toml

@@ -1,5 +1,12 @@
 status = [
+  "ci 1.5 - ubuntu-latest",
+  "ci 1.5 - windows-latest",
+  "ci 1.5 - macOS-latest",
+  "ci 1.6.0 - ubuntu-latest",
+  "ci 1.6.0 - windows-latest",
+  "ci 1.6.0 - macOS-latest",
   "buildkite/turbulenceconvection-ci",
+  "docbuild",
   "format",
 ]
 delete_merged_branches = true

docs/Project.toml

@@ -0,0 +1,5 @@
+[deps]
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+DocumenterCitations = "daee34ce-89f3-4625-b898-19384cb65244"
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
+TurbulenceConvection = "8e072fc4-01f8-44fb-b9dc-f9336c367e6b"

docs/bibliography.bib

@@ -0,0 +1,16 @@
+# The citation keys have been formatted as:
+#    Last author name (titlecase), followed by
+#    (no characters in-between) the year.
+
+@article{Nishizawa2018,
+  title = {A Surface Flux Scheme Based on the Monin-Obukhov Similarity for Finite Volume Models},
+  author = {Nishizawa, S and Kitamura, Y},
+  journal = {Journal of Advances in Modeling Earth Systems},
+  volume = {10},
+  number = {12},
+  doi = {10.1029/2018MS001534},
+  pages = {3159--3175},
+  year = {2018},
+  publisher = {Wiley Online Library}
+}
+

docs/make.jl

@@ -0,0 +1,43 @@
+using TurbulenceConvection, Documenter
+using DocumenterCitations
+
+bib = CitationBibliography(joinpath(@__DIR__, "bibliography.bib"))
+
+#! format: off
+pages = Any[
+    "Home" => "index.md",
+]
+
+mathengine = MathJax(Dict(
+    :TeX => Dict(
+        :equationNumbers => Dict(:autoNumber => "AMS"),
+        :Macros => Dict(),
+    ),
+))
+
+format = Documenter.HTML(
+    prettyurls = get(ENV, "CI", nothing) == "true",
+    mathengine = mathengine,
+    collapselevel = 1,
+)
+#! format: on
+
+makedocs(
+    bib,
+    sitename = "TurbulenceConvection.jl",
+    strict = true,
+    format = format,
+    checkdocs = :exports,
+    clean = true,
+    doctest = true,
+    modules = [TurbulenceConvection],
+    pages = pages,
+)
+
+deploydocs(
+    repo = "github.com/CliMA/TurbulenceConvection.jl.git",
+    target = "build",
+    push_preview = true,
+    devbranch = "main",
+    forcepush = true,
+)

docs/src/index.md

@@ -0,0 +1,2 @@
+# TurbulenceConvection.jl
+