Merge pull request #3288 from CliMA/ck/upjet

Update perf dependencies

perf/Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "3ab1b0110c2d964d6e0dd21cb828e8bc3dc7f429"
+project_hash = "1b8f2c1a4c1bc4fd937f4c1ec969061b8acdbb19"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0"
@@ -574,12 +574,6 @@ git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
 uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
 version = "4.1.1"
 
-[[deps.Cthulhu]]
-deps = ["CodeTracking", "FoldingTrees", "InteractiveUtils", "JuliaSyntax", "PrecompileTools", "Preferences", "REPL", "TypedSyntax", "UUIDs", "Unicode", "WidthLimitedIO"]
-git-tree-sha1 = "6dd420e944a3be328f91088d6a1af02576ccba4b"
-uuid = "f68482b8-f384-11e8-15f7-abe071a5a75f"
-version = "2.15.0"
-
 [[deps.CubedSphere]]
 deps = ["TaylorSeries"]
 git-tree-sha1 = "51bb25de518b4c62b7cdf26e5fbb84601bb27a60"
@@ -932,12 +926,6 @@ git-tree-sha1 = "bd1aaf448be998ea427b1c7213b8acf2e278498b"
 uuid = "08572546-2f56-4bcf-ba4e-bab62c3a3f89"
 version = "1.0.0"
 
-[[deps.FoldingTrees]]
-deps = ["AbstractTrees", "REPL"]
-git-tree-sha1 = "d94efd85f2fe192cdf664aa8b7c431592faed59e"
-uuid = "1eca21be-9b9b-4ed8-839a-6d8ae26b1781"
-version = "1.2.1"
-
 [[deps.Fontconfig_jll]]
 deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"]
 git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23"
@@ -1309,10 +1297,18 @@ uuid = "82899510-4779-5014-852e-03e436cf321d"
 version = "1.0.0"
 
 [[deps.JET]]
-deps = ["InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Revise", "Test"]
-git-tree-sha1 = "6ff76fc594051832ce91078686bc0d3def6d42c5"
+deps = ["CodeTracking", "InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Test"]
+git-tree-sha1 = "2be1a06ddab589ac6d09930eb36e4365416261b2"
 uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
-version = "0.8.29"
+version = "0.9.9"
+
+    [deps.JET.extensions]
+    JETCthulhuExt = "Cthulhu"
+    ReviseExt = "Revise"
+
+    [deps.JET.weakdeps]
+    Cthulhu = "f68482b8-f384-11e8-15f7-abe071a5a75f"
+    Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
@@ -1346,21 +1342,16 @@ version = "3.0.3+0"
 
 [[deps.JuliaInterpreter]]
 deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
-git-tree-sha1 = "4b415b6cccb9ab61fec78a621572c82ac7fa5776"
+git-tree-sha1 = "2984284a8abcfcc4784d95a9e2ea4e352dd8ede7"
 uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
-version = "0.9.35"
+version = "0.9.36"
 
 [[deps.JuliaNVTXCallbacks_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f"
 uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e"
 version = "0.2.1+0"
 
-[[deps.JuliaSyntax]]
-git-tree-sha1 = "937da4713526b96ac9a178e2035019d3b78ead4a"
-uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4"
-version = "0.4.10"
-
 [[deps.KLU]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
 git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9"
@@ -1667,9 +1658,9 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"]
 
 [[deps.LoweredCodeUtils]]
 deps = ["JuliaInterpreter"]
-git-tree-sha1 = "0b8cf121228f7dae022700c1c11ac1f04122f384"
+git-tree-sha1 = "1ce1834f9644a8f7c011eb0592b7fd6c42c90653"
 uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b"
-version = "2.3.2"
+version = "3.0.1"
 
 [[deps.Lz4_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -2318,12 +2309,6 @@ git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9"
 uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b"
 version = "1.1.1"
 
-[[deps.Revise]]
-deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"]
-git-tree-sha1 = "85ddd93ea15dcd8493400600e09104a9e94bb18d"
-uuid = "295af30f-e4ad-537b-8983-00126c2a3abe"
-version = "3.5.15"
-
 [[deps.Rmath]]
 deps = ["Random", "Rmath_jll"]
 git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
@@ -2376,9 +2361,9 @@ version = "0.6.43"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "303a73db99326a8be43e695fbab9e076b02118ca"
+git-tree-sha1 = "952e09c65264fe2a8155dd6aad60c188a0b83f69"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.52.2"
+version = "2.53.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2495,16 +2480,28 @@ uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47"
 version = "0.1.3"
 
 [[deps.SnoopCompile]]
-deps = ["AbstractTrees", "Cthulhu", "FlameGraphs", "InteractiveUtils", "JET", "OrderedCollections", "Pkg", "Printf", "Profile", "Requires", "Serialization", "SnoopCompileCore", "YAML"]
-git-tree-sha1 = "894e542ef8553c82ead28171e6c144d0fb492563"
+deps = ["AbstractTrees", "FlameGraphs", "InteractiveUtils", "OrderedCollections", "Pkg", "Printf", "Profile", "Serialization", "SnoopCompileCore", "YAML"]
+git-tree-sha1 = "d13633f779365415c877f5ffe07db8803ad73fba"
 uuid = "aa65fe97-06da-5843-b5b1-d5d13cad87d2"
-version = "2.10.8"
+version = "3.0.0"
+
+    [deps.SnoopCompile.extensions]
+    CthulhuExt = "Cthulhu"
+    JETExt = ["JET", "Cthulhu"]
+    SCPrettyTablesExt = "PrettyTables"
+    SCPyPlotExt = "PyPlot"
+
+    [deps.SnoopCompile.weakdeps]
+    Cthulhu = "f68482b8-f384-11e8-15f7-abe071a5a75f"
+    JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
+    PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
+    PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
 
 [[deps.SnoopCompileCore]]
 deps = ["Serialization"]
-git-tree-sha1 = "0fc98257d960ec35b9339ca394b93954cfaf5ecd"
+git-tree-sha1 = "32d1b8d669ee7a7d8ecb6bc2046d6e019f1e0571"
 uuid = "e2b509da-e806-4183-be48-004708413034"
-version = "2.10.1"
+version = "3.0.0"
 
 [[deps.Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
@@ -2794,12 +2791,6 @@ git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1"
 uuid = "781d530d-4396-4725-bb49-402e4bee1e77"
 version = "1.4.0"
 
-[[deps.TypedSyntax]]
-deps = ["CodeTracking", "JuliaSyntax"]
-git-tree-sha1 = "1b11092fc9eab26e21402ed313406a75d948634f"
-uuid = "d265eb64-f81a-44ad-a842-4247ee1503de"
-version = "1.4.1"
-
 [[deps.URIs]]
 git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
@@ -2863,12 +2854,6 @@ git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c"
 uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f"
 version = "0.2.0"
 
-[[deps.WidthLimitedIO]]
-deps = ["Unicode"]
-git-tree-sha1 = "71142739e695823729a335e9bc124ef41ec1433a"
-uuid = "b8c1c048-cf81-46c6-9da0-18c1d99e41f2"
-version = "1.0.1"
-
 [[deps.WoodburyMatrices]]
 deps = ["LinearAlgebra", "SparseArrays"]
 git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511"

perf/Project.toml

@@ -89,7 +89,7 @@ ProfileCanvas = "0.1"
 ProgressLogging = "0.1"
 QuadGK = "2"
 SciMLBase = "1, 2"
-SnoopCompileCore = "2"
+SnoopCompileCore = "3"
 TOML = "1"
 URIs = "1"
 julia = "1.7"

perf/inference_flame_init.jl

@@ -39,7 +39,7 @@ using ProfileView
 import Profile
 Profile.clear_malloc_data()
 Profile.clear()
-tinf = @snoopi_deep begin
+tinf = @snoop_inference begin
     do_work!(integrator_args, integrator_kwargs)
 end
 

perf/invalidations.jl

@@ -3,9 +3,9 @@ ClimaComms.@import_required_backends
 import ClimaAtmos as CA
 redirect_stderr(IOContext(stderr, :stacktrace_types_limited => Ref(false)))
 
-# From: https://timholy.github.io/SnoopCompile.jl/stable/snoopr/
+# From: https://timholy.github.io/SnoopCompile.jl/dev/tutorials/invalidations/#Tutorial-on-@snoop_invalidations
 using SnoopCompileCore
-invalidations = @snoopr begin
+invalidations = @snoop_invalidations begin
     (; config_file, job_id) = CA.commandline_kwargs()
     config = CA.AtmosConfig(config_file; job_id)
     include(joinpath(dirname(@__DIR__), "examples", "hybrid", "driver.jl"))