Skip to content
View Chengwei94's full-sized avatar

Block or report Chengwei94

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Showing results

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Jupyter Notebook 526 65 Updated Dec 20, 2024

scTM: A package for topic modelling in transcriptomics data

Python 8 Updated May 1, 2024

PyTorch library for solving imaging inverse problems using deep learning

Python 353 76 Updated Jan 4, 2025

A dataloader, but for JAX

Python 18 Updated May 17, 2024

A collection of learning resources for curious software engineers

Python 46,932 3,735 Updated Dec 23, 2024

Nonlinear optimisation (root-finding, least squares, ...) in JAX+Equinox. https://docs.kidger.site/optimistix/

Python 359 15 Updated Jan 3, 2025

Linear solvers in JAX and Equinox. https://docs.kidger.site/lineax

Python 385 24 Updated Jan 3, 2025

Elegant easy-to-use neural networks + scientific computing in JAX. https://docs.kidger.site/equinox/

Python 2,174 147 Updated Dec 24, 2024

Unifying Multimodal Variational Autoencoders (VAEs) in Pytorch

Python 28 6 Updated Dec 20, 2024

A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.

Python 27 2 Updated Dec 16, 2024

This repository extends scanpy to handle flow and mass cytometry data.

Jupyter Notebook 9 1 Updated Aug 5, 2022

Hypermodern Python Cookiecutter

Python 1,834 237 Updated May 18, 2024

A bioinformatics tool for analyzing the heterogeneity of single-cell populations

R 4 Updated Jan 21, 2022

muon is a multimodal omics Python framework

Python 223 30 Updated Dec 17, 2024

100 exercises to learn JAX

Jupyter Notebook 571 45 Updated Jun 11, 2022

🚀 Your next Python package needs a bleeding-edge project structure.

Python 1,087 124 Updated Sep 13, 2023

Supercharge Your Model Training

Python 5,220 429 Updated Jan 3, 2025

A repository of pipelines for single-cell data in Nextflow DSL2

Nextflow 75 32 Updated Apr 19, 2023

single cell Flux Estimation Analysis (scFEA) Try the below web server!

Jupyter Notebook 108 33 Updated Nov 10, 2023

📍 Interactive Studio for Explanatory Model Analysis

R 328 32 Updated Aug 31, 2023

A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

Python 22,849 2,018 Updated Dec 23, 2024

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

Python 431 59 Updated Dec 29, 2024

Multi-omic velocity inference

Python 107 11 Updated Oct 23, 2024

A collection of resources and papers on Diffusion Models

HTML 11,300 952 Updated Aug 1, 2024

Repository for the "Gotta Go Fast When Generating Data with Score-Based Models" paper

Python 105 8 Updated Nov 20, 2021

Implementations of a rather simple version of the Iterative Closest Point algorithm in various languages.

Python 302 61 Updated Sep 12, 2023

data and model repository for single-cell data

Python 135 11 Updated Dec 21, 2023

An R package designed to demultiplex cell hashing data

R 27 6 Updated Jan 1, 2025

Spatial Single Cell Analysis in Python

Python 450 85 Updated Dec 23, 2024
Next
Showing results