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@CampagneLaboratory

Campagne Laboratory

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  1. variationanalysis variationanalysis Public

    This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository contains the Matcha framework to help train and evaluate de…

    Java 50 20

  2. MetaR MetaR Public

    Simple Data Analysis language built with MPS. Generates R code. Metaprogramming in R, thus the name.

    Java 51 5

  3. NextflowWorkbench NextflowWorkbench Public

    An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the Nextflow.io middleware. Includes dockerfile language and IDE-…

    Java 22 4

  4. ANTLR_MPS ANTLR_MPS Public

    An ANTLR language for MPS, and the ToMPS language to help create MPS languages and ANTRL visitors from an ANTLR 4 grammar.

    Java 25 8

  5. Editor2PDF Editor2PDF Public

    Provides a mechanism to render an MPS editor to PDF automatically.

    Java 10 2

  6. goby3 goby3 Public

    Releases 3.+ of the Goby High-throughput sequencing framework and tools.

    Java 5 2

Repositories

Showing 10 of 66 repositories
  • GenotypeTensors Public

    This project provides tools to load the vectorized genotype information files (.vec/.vecp) produced with goby3 and variation analysis. It also demonstrates how to train deep-learning models using information in these files with pytorch.LICENSE

    CampagneLaboratory/GenotypeTensors’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Nov 20, 2018
  • torchfold Public Forked from nearai/torchfold

    Tools for PyTorch

    CampagneLaboratory/torchfold’s past year of commit activity
    Python 1 Apache-2.0 29 0 0 Updated Aug 2, 2018
  • variationanalysis-apps Public

    DNANexus applications to process alignments and help develop or use neural-network based model callers.

    CampagneLaboratory/variationanalysis-apps’s past year of commit activity
    Shell 1 MIT 1 0 0 Updated Jun 27, 2018
  • variationanalysis Public

    This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository contains the Matcha framework to help train and evaluate deep learning models trained with semi-simulation. See docs below for details.

    CampagneLaboratory/variationanalysis’s past year of commit activity
    Java 50 20 0 0 Updated Jun 1, 2018
  • goby3 Public

    Releases 3.+ of the Goby High-throughput sequencing framework and tools.

    CampagneLaboratory/goby3’s past year of commit activity
    Java 5 2 9 0 Updated Jun 1, 2018
  • Editor2PDF Public

    Provides a mechanism to render an MPS editor to PDF automatically.

    CampagneLaboratory/Editor2PDF’s past year of commit activity
    Java 10 AGPL-3.0 2 2 0 Updated May 24, 2018
  • pytorch-adda Public Forked from corenel/pytorch-adda

    A PyTorch implementation for Adversarial Discriminative Domain Adaptation

    CampagneLaboratory/pytorch-adda’s past year of commit activity
    Python 0 MIT 141 0 0 Updated Apr 24, 2018
  • gobyweb2-plugins Public

    Plugin repository for GobyWeb 2.2+

    CampagneLaboratory/gobyweb2-plugins’s past year of commit activity
    Perl 1 Apache-2.0 1 0 0 Updated Mar 4, 2018
  • GobyWeb-Singularity Public

    Singularity repo to package docker artifacts:base:latest container for running GobyWeb plugins with Singularity.

    CampagneLaboratory/GobyWeb-Singularity’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 19, 2018
  • picard Public Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    CampagneLaboratory/picard’s past year of commit activity
    Java 0 MIT 372 0 0 Updated Jan 12, 2018
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