Update template to v0.3.1

[scverse-bot]

cookiecutter-scverse released v0.3.1.

Changes

Enhancements

• Use Ruff formatting, run Ruff on notebooks by @flying-sheep in Use Ruff formatting, run Ruff on notebooks scverse/cookiecutter-scverse#256

Fixes

• Unpin node version, pre-commit autoupdate by @pre-commit-ci in Unpin node version, pre-commit autoupdate scverse/cookiecutter-scverse#255
• Fix copy without render by @grst in Fix copy without render scverse/cookiecutter-scverse#263
• Fix Ruff deprecations by @flying-sheep in Fix Ruff deprecations scverse/cookiecutter-scverse#267

Documentation

• Update contributing.md by @grst in Update contributing.md scverse/cookiecutter-scverse#259

Full Changelog: scverse/cookiecutter-scverse@v0.3.0...v0.3.1

Additional remarks

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  if you never want to sync from the template again, delete your .cruft file.
• If there are merge conflicts,
  they either show up inline (>>>>>>>) or a .rej file will have been created for the respective files.
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• The scverse template works best when the pre-commit.ci, readthedocs and codecov services are enabled.
  Make sure to activate those apps if you haven't already.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (e2dcd4b) 73.16% compared to head (ca50cc8) 73.16%.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #28   +/-   ##
=======================================
  Coverage   73.16%   73.16%           
=======================================
  Files          23       23           
  Lines        1241     1241           
=======================================
  Hits          908      908           
  Misses        333      333