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update changelog with changes from #332
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blankdots committed Mar 22, 2022
1 parent fed1a5f commit 5b32530
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3 changes: 2 additions & 1 deletion .github/config/.wordlist.txt
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Expand Up @@ -165,6 +165,7 @@ dockerfile
docstrings
doi
doiinfo
dois
dt
dzongkha
ean
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metatranscriptome
metatranscriptomic
metax
metaxservicehandler
metaxidentifier
metaxservicehandler
methylation
methylcytidine
mf
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14 changes: 11 additions & 3 deletions CHANGELOG.md
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Expand Up @@ -18,10 +18,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Adds configuration for mypy linting to VScode devcontainer setup
- Templates API #256
- use `ujson` as default json library
- Creating draft Datacite DOI for folders #257
- Creating draft Datacite DOI for folders #257 #332
- created a mock web app, which would act similarly to DataCite REST API
- altered `publish_folder` endpoint so that `extraInfo` containing the DOI data is added upon publishing
- added `datePublished` key to folders which takes in the date/time, when folder is published
- DOI Publishing and deletion to Datacite #332 #369
- create draft DOIs for both Study and Datasets and add them to the folder `extraInfo` when published
- delete draft DOIs on object delete
- update DOI info at Datacite when folder is published
- VScode Dev environment #287
- Add VS Code development container
- Update docker for development
Expand All @@ -39,7 +43,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- enum are sorted alphabetically, with the exception of other and unspecified values which are left at the end of the list
- allow for accession key in `referenceAlignment` & `process sequence` as array, previously all accession keys were converted to `accessionId` which is not correct
- add default `gender` as `unknown`

- multilevel add patch objects to support `/extraInfo/datasetIdentifiers/-` which needs dot notation for mongodb to work e.g. `extraInfo.datasetIdentifiers` #332

### Changed

Expand All @@ -53,7 +57,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- README updated with tox command, development build instructions, and prettify Dockerfile.
- Update ENA XML and JSON schemas #299
- Github actions changed the use of https://git.io/misspell to rojopolis/spellcheck-github-actions #316
- Separated most of the handlers to own files inside the handlers folder #319
- Separated most of the handlers to own files inside the handlers folder #319
- allow inserting only one study in folder #332
- JSON schemas #332
- introduce `keywords` required for Metax in `doiInfo`
- dataset `description` and study `studyAbstract` are now mandatory

### Fixed

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