add datacite schema to list of schemas

remove null from doi schema

metadata_backend/conf/conf.py

@@ -105,7 +105,7 @@ def create_db_client() -> AsyncIOMotorClient:
 
 # 2) Load schema types and descriptions from json
 # Default schemas will be ENA schemas
-path_to_schema_file = Path(__file__).parent / "ena_schemas.json"
+path_to_schema_file = Path(__file__).parent / "schemas.json"
 with open(path_to_schema_file) as schema_file:
     schema_types = ujson.load(schema_file)
 

metadata_backend/conf/ena_schemas.json → metadata_backend/conf/schemas.json

@@ -1,81 +1,101 @@
-{"submission": 
-  { "priority": 1, 
+{
+  "submission": {
+    "priority": 1,
     "description": {
       "title": "Submission",
       "detail": "A submission contains submission actions to be performed by the archive. A submission can add more objects to the archive, update already submitted objects or make objects publicly available.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/SRA.submission.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "study": 
-  { "priority": 2, 
+  "study": {
+    "priority": 2,
     "description": {
       "title": "Study",
       "detail": "A study groups together data submitted to the archive. A study accession is typically used when citing data submitted to ENA. Note that all associated data and other objects are made public when the study is released.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/SRA.study.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "project": 
-  { "priority": 3, 
+  "project": {
+    "priority": 3,
     "description": {
       "title": "Project",
       "detail": "A project groups together data submitted to the archive. A project accession is typically used when citing data submitted to ENA. Note that all associated data and other objects are made public when the project is released.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/ENA.project.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "sample": 
-  { "priority": 4, 
+  "sample": {
+    "priority": 4,
     "description": {
       "title": "Sample",
       "detail": "A sample contains information about the sequenced source material. Samples are typically associated with checklists, which define the fields used to annotate the samples.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/SRA.sample.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "experiment": 
-  { "priority": 5, 
+  "experiment": {
+    "priority": 5,
     "description": {
       "title": "Experiment",
       "detail": "An experiment contain information about a sequencing experiment including library and instrument details.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/SRA.experiment.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "run": 
-  { "priority": 6, 
+  "run": {
+    "priority": 6,
     "description": {
       "title": "Run",
       "detail": "A run is part of an experiment and refers to data files containing sequence reads.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/SRA.run.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "analysis": 
-  { "priority": 7, 
+  "analysis": {
+    "priority": 7,
     "description": {
       "title": "Analysis",
       "detail": "An analysis contains secondary analysis results derived from sequence reads (e.g. a genome assembly),",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/SRA.analysis.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "dac": 
-  { "priority": 8, 
+  "dac": {
+    "priority": 8,
     "description": {
       "title": "DAC",
       "detail": "An European Genome-phenome Archive (EGA) data access committee (DAC) is required for authorized access submissions.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/EGA.dac.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "policy": 
-  { "priority": 9, 
+  "policy": {
+    "priority": 9,
     "description": {
       "title": "Policy",
       "detail": "An European Genome-phenome Archive (EGA) data access policy is required for authorized access submissions.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/EGA.policy.xsd"
-    }
+    },
+    "provider": "ENA"
   },
-  "dataset": 
-  { "priority": 10, 
+  "dataset": {
+    "priority": 10,
     "description": {
       "title": "Dataset",
       "detail": "An European Genome-phenome Archive (EGA) data set is required for authorized access submissions.",
       "url": "https://github.com/enasequence/schema/blob/master/src/main/resources/uk/ac/ebi/ena/sra/schema/EGA.dataset.xsd"
-    }
+    },
+    "provider": "ENA"
+  },
+  "datacite": {
+    "priority": 11,
+    "description": {
+      "title": "Datacite DOI schema",
+      "detail": "Derived from the DataCite Metadata Schema whihc is a list of core metadata properties chosen for an accurate and consistent identification of a resource for citation and retrieval purposes, along with recommended use instructions. We only work with a subset of them for this schema.",
+      "url": "http://schema.datacite.org/"
+    },
+    "provider": "Datacite"
   }
 }