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Followup to #157. Avoids using `FilteredGraph` for the implementation of
`Region` and `FlatRegion` and instead implements the graph traits
manually to avoid doing full-graph traversals when we can do
better/faster checks.
Closes#159. Closes#145 (BFS rather than DFS). Closes#135.
BREAKING CHANGE: `Region` and `FlatRegion` are no longer aliases of
FilteredGraph
The LCA implementation does a depth-first-search on hierarchies.
https://github.com/CQCL/portgraph/blob/main/src/algorithms/lca.rs
We should expose that in a standalone submodule.
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