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358 Open 477 Closed
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Issues list

minScoreFraction
#972 opened Nov 12, 2024 by hamzaaitabbou96
Segmentation fault (core dumped) in bulk mode
#971 opened Oct 31, 2024 by linyiD001
Compilation with LLVM fails on Linux Rocky9/Ubuntu-22.04 - stdlib incorrectly chosen
#969 opened Oct 23, 2024 by dslarm
1
Performance issue in use of boost::math::digamma on aarch64 Linux
#966 opened Oct 16, 2024 by dslarm
1
2
stl_vector.h error
#965 opened Oct 15, 2024 by fdecarpentier
ERROR: file [DRR016125_2.fastq.gz] does not appear to exist!
#963 opened Oct 1, 2024 by ElToronjas
The contents of the quant.genes.sf file and the quant.sf file are identical.
#962 opened Sep 23, 2024 by happypiggyzjx
Salmon quant with --recoverOrphans fails without warning
#961 opened Sep 16, 2024 by Ecas9
How to use --read-geometry when specifying start and end of the both cDNA read pairs?
#960 opened Sep 11, 2024 by pchaturvedi-takara
Suggestions on --recoverOrphans
#959 opened Sep 11, 2024 by LinearParadox
Best practice specifying library type for 10X data
#958 opened Sep 9, 2024 by TereLaguinge
ERROR: Version Server Response: Not Found; missing symbol called
#957 opened Sep 6, 2024 by abhay030592
How to use metagenomic MAGs to align metatranscriptomic reads to obtain TPMs.
#956 opened Sep 4, 2024 by zx1474
Salmon 1.10.3 build failure
#953 opened Aug 20, 2024 by davidecarlson
Question about unassigned reads when running in alignment mode
#952 opened Aug 14, 2024 by zxl124
1
Doubts about running salmon after using STAR
#951 opened Aug 8, 2024 by desmodus1984
Some error was reported by the same command
#950 opened Aug 5, 2024 by YIGUIz
Salmon alevin cannot work well with 10X 3' V4 data
#949 opened Aug 2, 2024 by Cellecta
Identical insert size and SD
#948 opened Jul 30, 2024 by jamespblloyd-uwa
Dealing with Polycistronic transcripts
#947 opened Jul 22, 2024 by AlvaroBernardino
1
Error about Transcript * appears in the reference but did not appear in the BAM
#946 opened Jul 18, 2024 by YIGUIz
How to read the order of the counts in the ambig_info.tsv
#944 opened Jul 9, 2024 by callumparr
Salmon alevin errors out when cell barcode length is > 31 base pairs
#943 opened Jul 8, 2024 by connersk
1
Error reading from the FASTA/Q stream. Minimum return code for left and right read was (-2).
#941 opened Jun 27, 2024 by Hanjiangna
salmon quantmerge Error
#940 opened Jun 19, 2024 by Quzelei
ProTip! Exclude everything labeled bug with -label:bug.