update to src layout and cleanup dependencies. (#176) #203
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| name: CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: | |
| - develop | |
| - master | |
| - main | |
| jobs: | |
| test-full: | |
| name: Full Test Suite | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Conda with Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| - name: Check Conda and install libnfft3 | |
| shell: bash -l {0} | |
| run: | | |
| conda info | |
| conda list | |
| python --version | |
| - name: Install Dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python --version | |
| which python | |
| python -m pip install --upgrade pip | |
| python -m pip install git+https://github.com/CEA-COSMIC/ModOpt.git@develop | |
| python -m pip install git+https://github.com/CEA-COSMIC/pysap.git@develop | |
| python -m pip install git+https://github.com/AGrigis/pysphinxdoc.git | |
| python -m pip install coverage nose pytest pytest-cov pycodestyle pydocstyle twine pytest-xdist | |
| python -m pip install --upgrade . | |
| - name: Check PEP | |
| shell: bash -l {0} | |
| continue-on-error: true | |
| run: | | |
| pycodestyle mri --ignore="E121,E123,E126,E226,E24,E704,E402,E731,E722,E741,W503,W504,W605" | |
| pycodestyle examples --ignore="E121,E123,E126,E226,E24,E704,E402,E731,E722,E741,W503,W504,W605" | |
| pydocstyle mri --convention=numpy | |
| pydocstyle examples --convention=numpy | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| which python | |
| pytest | |
| - name: Save Test Results | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: unit-test-results-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: pytest.xml | |
| - name: Check Distribution | |
| shell: bash -l {0} | |
| run: | | |
| python setup.py sdist | |
| twine check dist/* | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| flags: unittests | |