Carbon Health Onboarding - Test MO

CDCgov · Jan 3, 2025 · 6edc13a · 6edc13a
1 parent a46da3b
commit 6edc13a
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Showing 2 changed files with 46 additions and 27 deletions.
diff --git a/prime-router/settings/STLTs/MO/mo-phd.yml b/prime-router/settings/STLTs/MO/mo-phd.yml
@@ -33,8 +33,10 @@
         replaceUnicodeWithAscii: false
         useBlankInsteadOfUnknown: null
         truncateHDNamespaceIds: true
+        truncateHl7Fields: "MSH-3-1, PID-3-3, PID-3-6, ORC-2-2, ORC-7-10-5, OBR-2-2,\
+        \ OBR-3-2, SPM-2-1-2, SPM-2-2-2, ORC-21-1, OBX-23-1, BX-15.1, OBX-23.10 "
         usePid14ForPatientEmail: false
-        convertTimestampToDateTime: null
+        convertTimestampToDateTime: "true"
         cliaForOutOfStateTesting: null
         cliaForSender: {}
         phoneNumberFormatting: "STANDARD"
@@ -48,51 +50,53 @@
         receivingOrganization: null
         convertPositiveDateTimeOffsetToNegative: false
         stripInvalidCharsRegex: null
-        convertDateTimesToReceiverLocalTime: false
+        convertDateTimesToReceiverLocalTime: true
         useHighPrecisionHeaderDateTimeFormat: false
         type: "HL7"
         truncationConfig:
           truncateHDNamespaceIds: true
           truncateHl7Fields:
             - "MSH-3-1"
-            - "PID-3-3"
-            - "PID-3-6"
-            - "ORC-2-2"
-            - "ORC-7-10-5"
             - "OBR-2-2"
             - "OBR-3-2"
+            - "OBX-15.1"
+            - "OBX-23-1"
+            - "OBX-23.10"
+            - "ORC-2-2"
+            - "ORC-21-1"
+            - "ORC-7-10-5"
+            - "PID-3-3"
+            - "PID-3-6"
             - "SPM-2-1-2"
             - "SPM-2-2-2"
-            - "ORC-21-1"
-            - "OBX-23-1"
-            - "OBX-15-1"
-            - "OBX-23-10"
           customLengthHl7Fields: {}
       jurisdictionalFilter:
-        - "(Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state = 'MO') or (Bundle.entry.resource.ofType(Patient).address.state = 'MO')"
+        - "(Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state\
+      \ = 'MO') or (Bundle.entry.resource.ofType(Patient).address.state = 'MO')"
       qualityFilter:
-        # Message id is not empty (MSH-10)
-        - "Bundle.identifier.value.exists()"
+        - "((Bundle.entry.resource.ofType(Specimen).collection.collectedPeriod.exists()\
+      \ or Bundle.entry.resource.ofType(Specimen).collection.collected.exists()) or\
+      \ (Bundle.entry.resource.ofType(ServiceRequest).occurrence.exists() or Bundle.entry.resource.ofType(Observation).effective.exists()))"
+        - "Bundle.entry.resource.ofType(Patient).birthDate.exists()"
         - "Bundle.entry.resource.ofType(Patient).name.family.exists()"
         - "Bundle.entry.resource.ofType(Patient).name.given.count() > 0"
-        - "Bundle.entry.resource.ofType(Patient).birthDate.exists()"
-        #  Specimen type (SPM-4) is not empty
+        - "Bundle.entry.resource.ofType(Patient).where(address.line[0].empty() and address.postalCode.empty()\
+      \ and telecom.where(system = 'phone').value.empty() and telecom.where(system\
+      \ = 'email').value.empty()).count() = 0"
         - "Bundle.entry.resource.ofType(Specimen).where(type.empty()).count() = 0"
-        # Patient has at least a street address(PID-11-1), postal code (PID-11-5),phone(PID-13) or email(PID-13-4)
-        - "Bundle.entry.resource.ofType(Patient).where(address.line[0].empty() and address.postalCode.empty() and telecom.where(system = 'phone').value.empty() and telecom.where(system = 'email').value.empty()).count() = 0"
-        - "((Bundle.entry.resource.ofType(Specimen).collection.collectedPeriod.exists() or Bundle.entry.resource.ofType(Specimen).collection.collected.exists()) or (Bundle.entry.resource.ofType(ServiceRequest).occurrence.exists() or Bundle.entry.resource.ofType(Observation).effective.exists()))"
+        - "Bundle.identifier.value.exists()"
       routingFilter: []
       processingModeFilter: []
       reverseTheQualityFilter: false
       conditionFilter:
-         # Positive COVID (840539006), Positive COVID-antibody (895448002) Positive MPOX (414015000)
-        - "%resource.where(interpretation.coding.code = 'A').code.coding.extension('https://reportstream.cdc.gov/fhir/StructureDefinition/condition-code').value.where(code in ('840539006'|'895448002'|'414015000')).exists()"
+        - "%resource.where(interpretation.coding.code = 'A').code.coding.extension('https://reportstream.cdc.gov/fhir/StructureDefinition/condition-code').value.where(code\
+      \ in ('414015000'|'840539006'|'895448002')).exists()"
       mappedConditionFilter: []
       deidentify: false
       deidentifiedValue: ""
       timing:
         operation: "MERGE"
-        numberPerDay: 12
+        numberPerDay: 1440
         initialTime: "01:20"
         timeZone: "EASTERN"
         maxReportCount: 100
@@ -101,11 +105,14 @@
           onlyOncePerDay: false
       description: ""
       transport:
-        type: SFTP
-        host: sftp
-        port: 22
-        filePath: ./upload
-        credentialName: DEFAULT-SFTP
-      enrichmentSchemaNames: []
+        host: "sftp"
+        port: "22"
+        filePath: "./upload"
+        credentialName: "DEFAULT-SFTP"
+        type: "SFTP"
+      externalName: null
+      enrichmentSchemaNames:
+        - "classpath:/metadata/fhir_transforms/common/handle-aoe-unknown-value/handle-aoe-unknown-value.yml"
+        - "classpath:/metadata/fhir_transforms/common/datetime-to-local-us-central.yml"
       timeZone: "CENTRAL"
       dateTimeFormat: "LOCAL"
diff --git a/...outer/src/main/resources/metadata/fhir_transforms/common/datetime-to-local-us-central.yml b/...outer/src/main/resources/metadata/fhir_transforms/common/datetime-to-local-us-central.yml
@@ -0,0 +1,12 @@
+elements:
+  - name: hl7-datetime-to-local
+    resource: "Bundle.descendants().where(url='https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2-date-time')"
+    bundleProperty: "%resource.value[x]"
+    value: ["%resource.value.changeTimezone('US/Central','LOCAL')"]
+
+  - name: message-date-time-to-local
+    resource: 'Bundle.entry.resource.ofType(MessageHeader).extension("https://reportstream.cdc.gov/fhir/StructureDefinition/msh-message-header").extension("MSH.7")'
+    condition: '%resource.value.exists()'
+    bundleProperty: '%resource.value[x]'
+    value: ["%resource.value.changeTimezone('US/Central','LOCAL')"]
+