Merge pull request #206 from CCBR/bug-fixes

fix: manorm used tagalign2 twice
CCBR · Aug 26, 2024 · 40300b0 · 40300b0
2 parents e497b74 + 7071bc2
commit 40300b0
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -20,6 +20,7 @@
 - In the biowulf config profile, switch variable $SLURM_JOBID to $SLURM_JOB_ID. (@kelly-sovacool)
 - Increase resource allocations for chipseeker and deeptools. (#192, @slsevilla)
 - Check the validity of the contrastsheet earlier on in the workflow. (#192, @slsevilla; #200, @kelly-sovacool)
+- Fix bug where `manorm` was using R1 twice instead of R1 and R2. (#206, @kelly-sovacool)
 
 ### Misc
 

diff --git a/modules/local/manorm/main.nf b/modules/local/manorm/main.nf
@@ -18,7 +18,7 @@ process MANORM_PAIRWISE {
     manorm \\
         --p1 ${peak1} \\
         --p2 ${peak2} \\
-        --r1 ${tagalign2} \\
+        --r1 ${tagalign1} \\
         --r2 ${tagalign2} \\
         --s1 ${meta1.fraglen} \\
         --s2 ${meta2.fraglen} \\