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style: link to sample sheet examples
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kelly-sovacool authored Oct 27, 2023
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Expand Up @@ -44,8 +44,8 @@ champagne run --mode slurm -profile test,biowulf
To run champagne on your own data, you'll need to create a sample sheet.
Take a look at these examples:

- [assets/samplesheet_test.csv] - mix of single and paired end reads downloaded from github.
- [assets/samplesheet_mm10.csv] - single end reads on biowulf.
- [assets/samplesheet_test.csv](/assets/samplesheet_test.csv) - mix of single and paired end reads downloaded from github.
- [assets/samplesheet_mm10.csv](/assets/samplesheet_test.csv) - single end reads on biowulf.

Once you've created a samplesheet with paths to your fastq files,
run champagne with the `--input` option to specify the path to your sample sheet:
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