This repository houses Python (Jupyter notebooks) and R codes used in the analysis of glycogene expressions in single-cell data of Tabula Sapiens.
The work is described in the following manuscript: P. Chrysinas, S. Venkatesan, I. Ang, V. Ghosh, C. Chen, S. Neelamegham, and Rudiyanto Gunawan. Cell and tissue-specific glycosylation pathways informed by single-cell transcriptomics, bioRxiv 559616, 2023
Two webtools, glycoCARTA and glycoTF, are available for exploring glycogene and glycopathway expression and transcriptional regulation. These webtools are parts of Systems Glycobiology resource virtualglycome.org. We provide an example use case of glycoCARTA and glycoTF here: Tutorial.
The contents of this Github repository are freely available for reuse under the MIT license.