Skip to content

Update README.md

Update README.md #220

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
name: R-CMD-check
on:
push:
branches: [ "main" ]
pull_request:
branches: [ "main" ]
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'}
- {os: macOS-latest, r: 'release'}
- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.posit.co/cran/__linux__/focal/latest"}
- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.posit.co/cran/__linux__/focal/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
DISPLAY: :99
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Install Chocolatey for windows
if: runner.os == 'Windows'
run: |
# Install Ghostscript & qpdf
choco install ghostscript qpdf --source=https://chocolatey.org/api/v2/
choco install rtools
- name: Set up R
uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
- name: Clean Up Previous Check Directories
if: runner.os != 'Windows'
run: |
find ${{ github.workspace }} -type d -name '.Rcheck' -exec rm -rf {} +
working-directory: ${{ github.workspace }}
- name: Install X11 dependencies on MacOS
if: runner.os == 'macOS'
run: |
brew install --cask xquartz
- name: Install imagemagick on MacOS
if: runner.os == 'macOS'
run: |
brew install imagemagick
R -e "install.packages(c('imager', 'imagerExtra', 'igraph', dependencies=TRUE))"
- name: Install pandoc on MacOS
if: runner.os == 'macOS'
run: |
brew install pandoc
- name: Install Packages on Linux
if: runner.os == 'Linux'
run: |
sudo apt install ghostscript
sudo apt install gsfonts
sudo apt install libmagick++-dev
sudo apt install libcurl4-openssl-dev
sudo apt-get install -y pandoc
R -e "install.packages(c('imager', 'magick', 'foreach', 'rcmdcheck', dependencies=TRUE))"
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Install Pandoc for windows
if: runner.os == 'Windows'
run: |
# Download and install Pandoc
choco install pandoc
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v4
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE, type = "source")
remotes::install_cran("rcmdcheck")
shell: Rscript {0}
- name: Use xvfb on Linux and MacOS
if: runner.os != 'Windows'
run: |
Xvfb :99 &
export DISPLAY=:99
- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: |
options(crayon.enabled = TRUE)
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
# - name: Debug Workspace Content
# run: ls -R ${{ github.workspace }}
# - name: Set up R dependencies
# uses: r-lib/actions/setup-r-dependencies@v2
# with:
# extra-packages: any::rcmdcheck
# needs: check
# - name: Install virtual display for tk
# run: sudo apt-get install xvfb
# - name: Run R CMD check
# run: xvfb-run R CMD check --no-manual .