Welcome to the SlideIO Tutorials repository! This repository contains a collection of Jupyter notebooks that serve as tutorials for using the SlideIO library. SlideIO is a library for reading and manipulating digital pathology slides. The tutorials cover various aspects of SlideIO, including image reading, metadata extraction, conversion to different formats, color transformation, and filter transformation.
The following tutorials are included in this repository:
-
general.ipynb: This notebook provides an introduction to SlideIO and covers the basics of using the library. It demonstrates how to read images, extract metadata, and perform other common tasks.
-
dicom.ipynb: Tutorial for reading of DICOM files
-
dicom-xd.ipynb: Tutorial for reading of multidimensional DICOM images
-
dicom-wsi.ipynb: Tutorial for reading of DICOM WSI files
-
olympus.ipynb: Tutorial for reading of Olympus VSI files
-
converter.ipynb: In this tutorial, you will learn how to convert pathology slides to the Aperio SVS format using SlideIO. It provides step-by-step instructions on how to perform the conversion process.
-
color-transformation.ipynb: This notebook explores image transformation techniques using SlideIO, with a particular focus on color transformations. You will learn how to manipulate color channels, adjust brightness and contrast, and perform other color-related operations.
-
filter-transformation.ipynb: In this tutorial, you will discover how to apply filters to pathology slides using SlideIO. It covers various filter techniques such as blurring, sharpening, and edge detection, and shows you how to integrate them into your workflow.
Feel free to explore these tutorials in any order that suits your needs. Each notebook provides detailed explanations and example code to help you understand and utilize SlideIO effectively.
If you find any issues with the tutorials or have ideas for improvements, please don't hesitate to open an issue or submit a pull request. Contributions from the community are greatly appreciated!
This repository is licensed under the BSD 3-clause license. You are free to use the code and tutorials provided here for your own projects. However, please note that the SlideIO library itself may have its own license, which you should consult when using it in other contexts.
For more information about SlideIO, please visit the official repository: SlideIO on GitHub.
Happy learning and exploring SlideIO!