'Acquisition' not defined when importing the package

[greg-bioinfo]

hi,
when i'm trying to import the package imc from steinbock.preprocessing i have this error.
Does anyone know why ?
Thanks

[Milad4849]

Hello,
I cannot reproduce the error on my side. Please make sure you are using the latest version of steinbock. If the problem persist please provide the the output of conda list for the conda environment that you use.

[greg-bioinfo]

Thank you for the answer.
I have the same issue on google colab.
I use the version 0.16.0

[Milad4849]

I cannot reproduce the error using steinbock 0.16.0. Could you please provide the your versions of the packages that steinbock requires?

[greg-bioinfo]

this ?

[Milad4849]

Not exactly, could you please make a conda environment and install steinbock in that environment? Then if the issue persists, paste the output of conda list here.

[greg-bioinfo]

Thanks for your patience.
I created a new environment and still got the same error. Here is the output of conda list.

[Milad4849]

Thanks for your reply and raising this issue. Currently the documentation regarding the use of the package in conda environments is incomplete. Here are the steps to use steinbock from a conda environment:

• create a new conda environment with python 3.9/3.8 and pip.

conda create -n "myenv" python=3.9 pip

• Activate the environment and Install the packages in requirements.txt using pip. The file is located at the steinbock root directory.

conda activate myenv
pip install -r path/to/requirements.txt

This should resolve the error you encounter.

[greg-bioinfo]

Perfect it works thank you for your availability

[super-818]

The file is located at the steinbock root directory didn‘t have requirements.txt