build #198
Workflow file for this run
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name: build | |
on: | |
push: | |
branches: | |
- main | |
tags: | |
- "v*" | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Build steinbock container | |
run: docker-compose build steinbock | |
env: | |
DOCKER_BUILDKIT: 1 | |
COMPOSE_DOCKER_CLI_BUILD: 1 | |
- name: Run pytest in steinbock container | |
run: docker-compose run pytest | |
env: | |
DOCKER_BUILDKIT: 1 | |
COMPOSE_DOCKER_CLI_BUILD: 1 | |
- name: Upload coverage | |
uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
files: coverage.xml | |
pypi: | |
needs: test | |
if: startsWith(github.ref, 'refs/tags') | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Setup Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.8 | |
- name: Build package | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install build | |
python -m build . | |
- name: Publish package | |
uses: pypa/gh-action-pypi-publish@release/v1 | |
with: | |
user: __token__ | |
password: ${{ secrets.PYPI_API_TOKEN }} | |
ghcr: | |
needs: test | |
if: startsWith(github.ref, 'refs/tags') | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Extract steinbock version | |
id: steinbock_meta | |
run: echo "::set-output name=version::${GITHUB_REF#refs/tags/v}" | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v2 | |
- name: Login to GitHub Container Registry | |
uses: docker/login-action@v2 | |
with: | |
registry: ghcr.io | |
username: ${{ github.actor }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
# steinbock | |
- name: Create steinbock container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: steinbock | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow | |
STEINBOCK_TARGET=steinbock | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_container_meta.outputs.labels }} | |
# steinbock-gpu | |
- name: Create steinbock-gpu container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_gpu_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
flavor: | | |
suffix=-gpu,onlatest=true | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock-gpu container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: steinbock | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow-gpu | |
STEINBOCK_TARGET=steinbock | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_gpu_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_gpu_container_meta.outputs.labels }} | |
# steinbock-cellpose | |
- name: Create steinbock-cellpose container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_cellpose_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
flavor: | | |
suffix=-cellpose,onlatest=true | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock-cellpose container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: steinbock-cellpose | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow | |
STEINBOCK_TARGET=steinbock-cellpose | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_cellpose_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_cellpose_container_meta.outputs.labels }} | |
# steinbock-cellpose-gpu | |
- name: Create steinbock-cellpose-gpu container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_cellpose_gpu_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
flavor: | | |
suffix=-cellpose-gpu,onlatest=true | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock-cellpose-gpu container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: steinbock-cellpose | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow-gpu | |
STEINBOCK_TARGET=steinbock-cellpose | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_cellpose_gpu_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_cellpose_gpu_container_meta.outputs.labels }} | |
# steinbock-xpra | |
- name: Create steinbock-xpra container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_xpra_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
flavor: | | |
suffix=-xpra,onlatest=true | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock-xpra container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: xpra | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow | |
STEINBOCK_TARGET=steinbock | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_xpra_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_xpra_container_meta.outputs.labels }} | |
# steinbock-gpu-xpra | |
- name: Create steinbock-gpu-xpra container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_gpu_xpra_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
flavor: | | |
suffix=-gpu-xpra,onlatest=true | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock-gpu-xpra container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: xpra | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow-gpu | |
STEINBOCK_TARGET=steinbock | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_gpu_xpra_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_gpu_xpra_container_meta.outputs.labels }} | |
# steinbock-cellpose-xpra | |
- name: Create steinbock-cellpose-xpra container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_cellpose_xpra_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
flavor: | | |
suffix=-cellpose-xpra,onlatest=true | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock-cellpose-xpra container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: xpra | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow | |
STEINBOCK_TARGET=steinbock-cellpose | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_cellpose_xpra_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_cellpose_xpra_container_meta.outputs.labels }} | |
# steinbock-cellpose-gpu-xpra | |
- name: Create steinbock-cellpose-gpu-xpra container metadata | |
uses: docker/metadata-action@v4 | |
id: steinbock_cellpose_gpu_xpra_container_meta | |
with: | |
images: ghcr.io/${{ github.repository }} | |
flavor: | | |
suffix=-cellpose-gpu-xpra,onlatest=true | |
tags: | | |
type=semver,pattern={{major}} | |
type=semver,pattern={{major}}.{{minor}} | |
type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
- name: Build and publish steinbock-cellpose-gpu-xpra container | |
uses: docker/build-push-action@v3 | |
with: | |
context: . | |
push: true | |
target: xpra | |
build-args: | | |
TENSORFLOW_TARGET=tensorflow-gpu | |
STEINBOCK_TARGET=steinbock-cellpose | |
STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
tags: ${{ steps.steinbock_cellpose_gpu_xpra_container_meta.outputs.tags }} | |
labels: ${{ steps.steinbock_cellpose_gpu_xpra_container_meta.outputs.labels }} |