build #193
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Build steinbock container | |
| run: docker-compose build steinbock | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| - name: Run pytest in steinbock container | |
| run: docker-compose run pytest | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage.xml | |
| pypi: | |
| needs: test | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Build package | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install build | |
| python -m build . | |
| - name: Publish package | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| ghcr: | |
| needs: test | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Extract steinbock version | |
| id: steinbock_meta | |
| run: echo "::set-output name=version::${GITHUB_REF#refs/tags/v}" | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| # steinbock | |
| - name: Create steinbock container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: steinbock | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow | |
| STEINBOCK_TARGET=steinbock | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_container_meta.outputs.labels }} | |
| # steinbock-gpu | |
| - name: Create steinbock-gpu container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_gpu_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| flavor: | | |
| suffix=-gpu,onlatest=true | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock-gpu container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: steinbock | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow-gpu | |
| STEINBOCK_TARGET=steinbock | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_gpu_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_gpu_container_meta.outputs.labels }} | |
| # steinbock-cellpose | |
| - name: Create steinbock-cellpose container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_cellpose_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| flavor: | | |
| suffix=-cellpose,onlatest=true | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock-cellpose container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: steinbock-cellpose | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow | |
| STEINBOCK_TARGET=steinbock-cellpose | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_cellpose_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_cellpose_container_meta.outputs.labels }} | |
| # steinbock-cellpose-gpu | |
| - name: Create steinbock-cellpose-gpu container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_cellpose_gpu_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| flavor: | | |
| suffix=-cellpose-gpu,onlatest=true | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock-cellpose-gpu container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: steinbock-cellpose | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow-gpu | |
| STEINBOCK_TARGET=steinbock-cellpose | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_cellpose_gpu_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_cellpose_gpu_container_meta.outputs.labels }} | |
| # steinbock-xpra | |
| - name: Create steinbock-xpra container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_xpra_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| flavor: | | |
| suffix=-xpra,onlatest=true | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock-xpra container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: xpra | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow | |
| STEINBOCK_TARGET=steinbock | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_xpra_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_xpra_container_meta.outputs.labels }} | |
| # steinbock-gpu-xpra | |
| - name: Create steinbock-gpu-xpra container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_gpu_xpra_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| flavor: | | |
| suffix=-gpu-xpra,onlatest=true | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock-gpu-xpra container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: xpra | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow-gpu | |
| STEINBOCK_TARGET=steinbock | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_gpu_xpra_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_gpu_xpra_container_meta.outputs.labels }} | |
| # steinbock-cellpose-xpra | |
| - name: Create steinbock-cellpose-xpra container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_cellpose_xpra_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| flavor: | | |
| suffix=-cellpose-xpra,onlatest=true | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock-cellpose-xpra container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: xpra | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow | |
| STEINBOCK_TARGET=steinbock-cellpose | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_cellpose_xpra_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_cellpose_xpra_container_meta.outputs.labels }} | |
| # steinbock-cellpose-gpu-xpra | |
| - name: Create steinbock-cellpose-gpu-xpra container metadata | |
| uses: docker/metadata-action@v4 | |
| id: steinbock_cellpose_gpu_xpra_container_meta | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| flavor: | | |
| suffix=-cellpose-gpu-xpra,onlatest=true | |
| tags: | | |
| type=semver,pattern={{major}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}}.{{minor}}.{{patch}} | |
| - name: Build and publish steinbock-cellpose-gpu-xpra container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| target: xpra | |
| build-args: | | |
| TENSORFLOW_TARGET=tensorflow-gpu | |
| STEINBOCK_TARGET=steinbock-cellpose | |
| STEINBOCK_VERSION=${{ steps.steinbock_meta.outputs.version }} | |
| tags: ${{ steps.steinbock_cellpose_gpu_xpra_container_meta.outputs.tags }} | |
| labels: ${{ steps.steinbock_cellpose_gpu_xpra_container_meta.outputs.labels }} |