Skip to content

BodenmillerGroup/IMC_NSCLC_CAF

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

3 Commits
00_merge_area-size.Rmd
00_merge_area-size.Rmd
 
 
00_prepare_clinicaldata.Rmd
00_prepare_clinicaldata.Rmd
 
 
01_Merge-sce-objects.Rmd
01_Merge-sce-objects.Rmd
 
 
02_glm_tumour-non-tumour_perTMA.Rmd
02_glm_tumour-non-tumour_perTMA.Rmd
 
 
03_Check_tumour_non-tumouor_afterGLM.Rmd
03_Check_tumour_non-tumouor_afterGLM.Rmd
 
 
04_02_cluster_Tcells.Rmd
04_02_cluster_Tcells.Rmd
 
 
04_cluster_immune-cells.Rmd
04_cluster_immune-cells.Rmd
 
 
05_cluster_stroma-cells.Rmd
05_cluster_stroma-cells.Rmd
 
 
06_cluster_vessel-cells.Rmd
06_cluster_vessel-cells.Rmd
 
 
07_cluster_CAFs.Rmd
07_cluster_CAFs.Rmd
 
 
08_merge-all-cells_post-Clustering.Rmd
08_merge-all-cells_post-Clustering.Rmd
 
 
09_cluster_tumour_cells.Rmd
09_cluster_tumour_cells.Rmd
 
 
20230821_Revisions.Rmd
20230821_Revisions.Rmd
 
 
Analysis_Distances.Rmd
Analysis_Distances.Rmd
 
 
Analysis_Fibro.Rmd
Analysis_Fibro.Rmd
 
 
Analysis_Fibro_DensitiesperStroma.Rmd
Analysis_Fibro_DensitiesperStroma.Rmd
 
 
Analysis_Immune-nonT.Rmd
Analysis_Immune-nonT.Rmd
 
 
Analysis_Immune_Tcell_category.Rmd
Analysis_Immune_Tcell_category.Rmd
 
 
Analysis_Immune_Tcell_types.Rmd
Analysis_Immune_Tcell_types.Rmd
 
 
Analysis_Immune_Types.Rmd
Analysis_Immune_Types.Rmd
 
 
Analysis_Tcells.Rmd
Analysis_Tcells.Rmd
 
 
Analysis_all_clustered_prop_den.Rmd
Analysis_all_clustered_prop_den.Rmd
 
 
Analysis_all_minus_Tumour.Rmd
Analysis_all_minus_Tumour.Rmd
 
 
Analysis_merged_by_category_T_I_C_V_patroirem.Rmd
Analysis_merged_by_category_T_I_C_V_patroirem.Rmd
 
 
Analysis_tumour.Rmd
Analysis_tumour.Rmd
 
 
Anaysis_vessel.Rmd
Anaysis_vessel.Rmd
 
 
Cytomapper_Sanity_Checks.Rmd
Cytomapper_Sanity_Checks.Rmd
 
 
Plots.Rmd
Plots.Rmd
 
 
README.md
README.md
 
 
Read_LC_NSCLC_TMA_175_A.Rmd
Read_LC_NSCLC_TMA_175_A.Rmd
 
 
Read_LC_NSCLC_TMA_175_B.Rmd
Read_LC_NSCLC_TMA_175_B.Rmd
 
 
Read_LC_NSCLC_TMA_175_C.Rmd
Read_LC_NSCLC_TMA_175_C.Rmd
 
 
Read_LC_NSCLC_TMA_176A.Rmd
Read_LC_NSCLC_TMA_176A.Rmd
 
 
Read_LC_NSCLC_TMA_176B.Rmd
Read_LC_NSCLC_TMA_176B.Rmd
 
 
Read_LC_NSCLC_TMA_176C.Rmd
Read_LC_NSCLC_TMA_176C.Rmd
 
 
Read_LC_NSCLC_TMA_178_A.Rmd
Read_LC_NSCLC_TMA_178_A.Rmd
 
 
Read_LC_NSCLC_TMA_178_B.Rmd
Read_LC_NSCLC_TMA_178_B.Rmd
 
 
Read_LC_NSCLC_TMA_178_C.Rmd
Read_LC_NSCLC_TMA_178_C.Rmd
 
 
Read_LC_NSCLC_TMA_86_A.Rmd
Read_LC_NSCLC_TMA_86_A.Rmd
 
 
Read_LC_NSCLC_TMA_86_B.Rmd
Read_LC_NSCLC_TMA_86_B.Rmd
 
 
Read_LC_NSCLC_TMA_86_C.Rmd
Read_LC_NSCLC_TMA_86_C.Rmd
 
 
Read_LC_NSCLC_TMA_87_A.Rmd
Read_LC_NSCLC_TMA_87_A.Rmd
 
 
Read_LC_NSCLC_TMA_87_B.Rmd
Read_LC_NSCLC_TMA_87_B.Rmd
 
 
Read_LC_NSCLC_TMA_87_C.Rmd
Read_LC_NSCLC_TMA_87_C.Rmd
 
 
Read_LC_NSCLC_TMA_88_A.Rmd
Read_LC_NSCLC_TMA_88_A.Rmd
 
 
Read_LC_NSCLC_TMA_88_B.Rmd
Read_LC_NSCLC_TMA_88_B.Rmd
 
 
Read_LC_NSCLC_TMA_88_C.Rmd
Read_LC_NSCLC_TMA_88_C.Rmd
 
 
combine_ROI_clinical-data.Rmd
combine_ROI_clinical-data.Rmd
 
 

Repository files navigation

IMC_NSCLC_CAF

IMC analyis CAFs in NSCLC

About

IMC analyis CAFs in NSCLC

Resources

Readme
Activity
Custom properties

Stars

2 stars

Watchers

4 watching

Forks

0 forks
Report repository

Releases 1

Analysis code for Cancer-associated fibroblast phenotypes predict patient outcome in non-small cell lung cancer Latest
May 29, 2023

Packages

No packages published