Add Nexus example

[ilkilic]

No description provided.

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 53.42%. Comparing base (8d5b0ab) to head (38b15a7).
Report is 78 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #164      +/-   ##
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- Coverage   60.07%   53.42%   -6.66%     
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  Files         109      122      +13     
  Lines        7838     9674    +1836     
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+ Hits         4709     5168     +459     
- Misses       3129     4506    +1377     

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[darshanmandge]

Thanks. I have some minor comments.

[AurelienJaquier]

in run_emodel_search_thresh.ipynb:
-Looks like we have an error :
EModel.init() got an unexpected keyword argument 'nexus_images'
It looks like you might have to change EModel init()
-maybe the threshold search could use a few more comments
-your ramp current is a step
-you could modify the title of the notebook by 'Download an e-model as a hoc file and run it with BlueCelluLab'

[AurelienJaquier]

So this is using bbp-workflow. Can it be used outside of bb5? If not, we should say it clearly

[ilkilic]

afaik it cannot be used outisde bb5. I have updated the readme make it clearer and added a note that python 3.10 is required for this example, as bbp-workflow only supports python versions 3.10 and higher.

[ilkilic]

in run_emodel_search_thresh.ipynb: -Looks like we have an error : EModel.init() got an unexpected keyword argument 'nexus_images' It looks like you might have to change EModel init() -maybe the threshold search could use a few more comments -your ramp current is a step -you could modify the title of the notebook by 'Download an e-model as a hoc file and run it with BlueCelluLab'

sorry, I accidentally committed this file. It shouldn't be here. run_emodel.ipynb is the correct one.

[darshanmandge]

thanks for your effort!