BlueBrain · ilkilic · Aug 14, 2024 · Aug 14, 2024 · Aug 14, 2024 · Aug 14, 2024
diff --git a/.compile_mod.sh b/.compile_mod.sh
@@ -1,6 +1,6 @@
 #!/bin/sh
 
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/README.rst b/README.rst
@@ -129,7 +129,7 @@ The development and maintenance of this code is supported by funding to the Blue
 Copyright
 =========
 
-Copyright (c) 2023 Blue Brain Project/EPFL
+Copyright (c) 2023-2024 Blue Brain Project/EPFL
 
 This work is licensed under `Apache 2.0 <https://www.apache.org/licenses/LICENSE-2.0.html>`_
 

diff --git a/bluecellulab/cell/cell_dict.py b/bluecellulab/cell/cell_dict.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/core.py b/bluecellulab/cell/core.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/injector.py b/bluecellulab/cell/injector.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/plotting.py b/bluecellulab/cell/plotting.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/random.py b/bluecellulab/cell/random.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/section_distance.py b/bluecellulab/cell/section_distance.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/serialized_sections.py b/bluecellulab/cell/serialized_sections.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/sonata_proxy.py b/bluecellulab/cell/sonata_proxy.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/stimuli_generator.py b/bluecellulab/cell/stimuli_generator.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/cell/template.py b/bluecellulab/cell/template.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/circuit_access/bluepy_circuit_access.py b/bluecellulab/circuit/circuit_access/bluepy_circuit_access.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/circuit_access/definition.py b/bluecellulab/circuit/circuit_access/definition.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/circuit_access/sonata_circuit_access.py b/bluecellulab/circuit/circuit_access/sonata_circuit_access.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/config/bluepy_simulation_config.py b/bluecellulab/circuit/config/bluepy_simulation_config.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/config/definition.py b/bluecellulab/circuit/config/definition.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/config/sections.py b/bluecellulab/circuit/config/sections.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/config/sonata_simulation_config.py b/bluecellulab/circuit/config/sonata_simulation_config.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/format.py b/bluecellulab/circuit/format.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/iotools.py b/bluecellulab/circuit/iotools.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/node_id.py b/bluecellulab/circuit/node_id.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/simulation_access.py b/bluecellulab/circuit/simulation_access.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/synapse_properties.py b/bluecellulab/circuit/synapse_properties.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit/validate.py b/bluecellulab/circuit/validate.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/circuit_simulation.py b/bluecellulab/circuit_simulation.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/connection.py b/bluecellulab/connection.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/dendrogram.py b/bluecellulab/dendrogram.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/exceptions.py b/bluecellulab/exceptions.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/importer.py b/bluecellulab/importer.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/neuron_interpreter.py b/bluecellulab/neuron_interpreter.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/plotwindow.py b/bluecellulab/plotwindow.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/psection.py b/bluecellulab/psection.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/psegment.py b/bluecellulab/psegment.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/rngsettings.py b/bluecellulab/rngsettings.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/simulation/neuron_globals.py b/bluecellulab/simulation/neuron_globals.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/simulation/simulation.py b/bluecellulab/simulation/simulation.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/stimulus/circuit_stimulus_definitions.py b/bluecellulab/stimulus/circuit_stimulus_definitions.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/synapse/synapse_factory.py b/bluecellulab/synapse/synapse_factory.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/synapse/synapse_types.py b/bluecellulab/synapse/synapse_types.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab/tools.py b/bluecellulab/tools.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/bluecellulab-bb5-tests/.compile_mod.sh → tests/bluecellulab-bb5-tests/.compile_mod.sh b/bluecellulab-bb5-tests/.compile_mod.sh → tests/bluecellulab-bb5-tests/.compile_mod.sh
diff --git a/bluecellulab-bb5-tests/.gitignore → tests/bluecellulab-bb5-tests/.gitignore b/bluecellulab-bb5-tests/.gitignore → tests/bluecellulab-bb5-tests/.gitignore
diff --git a/bluecellulab-bb5-tests/Makefile → tests/bluecellulab-bb5-tests/Makefile b/bluecellulab-bb5-tests/Makefile → tests/bluecellulab-bb5-tests/Makefile
@@ -2,7 +2,7 @@
 PIP_INDEX_URL := https://pypi.python.org/simple
 NEURON_MODULE_OPTIONS := '-nogui'
 TESTS_DIR := tests
-MECHANISMS_DIR := ./../tests/mechanisms/
+MECHANISMS_DIR := ./../mechanisms/
 PYTEST_OPTS := --numprocesses=auto --timeout=600 -vsx --forked
 
 # Default rule (similar to 'testenv' in tox)

diff --git a/bluecellulab-bb5-tests/README.md → tests/bluecellulab-bb5-tests/README.md b/bluecellulab-bb5-tests/README.md → tests/bluecellulab-bb5-tests/README.md
diff --git a/bluecellulab-bb5-tests/pytest.ini → tests/bluecellulab-bb5-tests/pytest.ini b/bluecellulab-bb5-tests/pytest.ini → tests/bluecellulab-bb5-tests/pytest.ini
diff --git a/bluecellulab-bb5-tests/pyvenv.cfg → tests/bluecellulab-bb5-tests/pyvenv.cfg b/bluecellulab-bb5-tests/pyvenv.cfg → tests/bluecellulab-bb5-tests/pyvenv.cfg
diff --git a/bluecellulab-bb5-tests/test_requirements.txt → ...ecellulab-bb5-tests/test_requirements.txt b/bluecellulab-bb5-tests/test_requirements.txt → ...ecellulab-bb5-tests/test_requirements.txt
diff --git a/...es/circuit_twocell_example1/CircuitConfig → ...es/circuit_twocell_example1/CircuitConfig b/...es/circuit_twocell_example1/CircuitConfig → ...es/circuit_twocell_example1/CircuitConfig
diff --git a/...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.hoc → ...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.hoc b/...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.hoc → ...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.hoc
diff --git a/...-C220197A-P2_axon-C060110A3_-_Clone_2.hoc → ...-C220197A-P2_axon-C060110A3_-_Clone_2.hoc b/...-C220197A-P2_axon-C060110A3_-_Clone_2.hoc → ...-C220197A-P2_axon-C060110A3_-_Clone_2.hoc
diff --git a/...les/circuit_twocell_example1/circuit.mvd2 → ...les/circuit_twocell_example1/circuit.mvd2 b/...les/circuit_twocell_example1/circuit.mvd2 → ...les/circuit_twocell_example1/circuit.mvd2
diff --git a/...les/circuit_twocell_example1/circuit.mvd3 → ...les/circuit_twocell_example1/circuit.mvd3 b/...les/circuit_twocell_example1/circuit.mvd3 → ...les/circuit_twocell_example1/circuit.mvd3
diff --git a/...cuit_twocell_example1/circuit_mvd2.sqlite → ...cuit_twocell_example1/circuit_mvd2.sqlite b/...cuit_twocell_example1/circuit_mvd2.sqlite → ...cuit_twocell_example1/circuit_mvd2.sqlite
diff --git a/...cuit_twocell_example1/default_user.target → ...cuit_twocell_example1/default_user.target b/...cuit_twocell_example1/default_user.target → ...cuit_twocell_example1/default_user.target
diff --git a/...-C220197A-P2_axon-C060110A3_-_Clone_2.asc → ...-C220197A-P2_axon-C060110A3_-_Clone_2.asc b/...-C220197A-P2_axon-C060110A3_-_Clone_2.asc → ...-C220197A-P2_axon-C060110A3_-_Clone_2.asc
diff --git a/...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.asc → ...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.asc b/...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.asc → ...b060123a1_ch1_ct_b_hw_60x_1_-_Clone_1.asc
diff --git a/...le1/ncsFunctionalAllRecipePathways/nrn.h5 → ...le1/ncsFunctionalAllRecipePathways/nrn.h5 b/...le1/ncsFunctionalAllRecipePathways/nrn.h5 → ...le1/ncsFunctionalAllRecipePathways/nrn.h5
diff --git a/.../ncsFunctionalAllRecipePathways/start.ncs → .../ncsFunctionalAllRecipePathways/start.ncs b/.../ncsFunctionalAllRecipePathways/start.ncs → .../ncsFunctionalAllRecipePathways/start.ncs
diff --git a/...sFunctionalAllRecipePathways/start.target → ...sFunctionalAllRecipePathways/start.target b/...sFunctionalAllRecipePathways/start.target → ...sFunctionalAllRecipePathways/start.target
diff --git a/...xamples/circuit_twocell_example1/nodes.h5 → ...xamples/circuit_twocell_example1/nodes.h5 b/...xamples/circuit_twocell_example1/nodes.h5 → ...xamples/circuit_twocell_example1/nodes.h5
diff --git a/...les/circuit_twocell_example1/start.target → ...les/circuit_twocell_example1/start.target b/...les/circuit_twocell_example1/start.target → ...les/circuit_twocell_example1/start.target
diff --git a/...ts/tests/examples/mtype_lists/L23_BTC.txt → ...ts/tests/examples/mtype_lists/L23_BTC.txt b/...ts/tests/examples/mtype_lists/L23_BTC.txt → ...ts/tests/examples/mtype_lists/L23_BTC.txt
diff --git a/.../examples/mtype_lists/L23_BTC_L23_LBC.txt → .../examples/mtype_lists/L23_BTC_L23_LBC.txt b/.../examples/mtype_lists/L23_BTC_L23_LBC.txt → .../examples/mtype_lists/L23_BTC_L23_LBC.txt
diff --git a/...amples/mtype_lists/L5_TTPC1_L6_TPC_L1.txt → ...amples/mtype_lists/L5_TTPC1_L6_TPC_L1.txt b/...amples/mtype_lists/L5_TTPC1_L6_TPC_L1.txt → ...amples/mtype_lists/L5_TTPC1_L6_TPC_L1.txt
diff --git a/...tests/examples/sim_sonata_node/.gitignore → ...tests/examples/sim_sonata_node/.gitignore b/...tests/examples/sim_sonata_node/.gitignore → ...tests/examples/sim_sonata_node/.gitignore
diff --git a/...amples/sim_sonata_node/BlueConfigTemplate → ...amples/sim_sonata_node/BlueConfigTemplate b/...amples/sim_sonata_node/BlueConfigTemplate → ...amples/sim_sonata_node/BlueConfigTemplate
diff --git a/...s/tests/examples/sim_sonata_node/nodes.h5 → ...s/tests/examples/sim_sonata_node/nodes.h5 b/...s/tests/examples/sim_sonata_node/nodes.h5 → ...s/tests/examples/sim_sonata_node/nodes.h5
diff --git a/...ests/examples/sim_sonata_node/user.target → ...ests/examples/sim_sonata_node/user.target b/...ests/examples/sim_sonata_node/user.target → ...ests/examples/sim_sonata_node/user.target
diff --git a/...tests/examples/sim_twocell_all/BlueConfig → ...tests/examples/sim_twocell_all/BlueConfig b/...tests/examples/sim_twocell_all/BlueConfig → ...tests/examples/sim_twocell_all/BlueConfig
diff --git a/.../sim_twocell_all/BlueConfigWithConditions → .../sim_twocell_all/BlueConfigWithConditions b/.../sim_twocell_all/BlueConfigWithConditions → .../sim_twocell_all/BlueConfigWithConditions
diff --git a/...l/BlueConfigWithInvalidConnectionContents → ...l/BlueConfigWithInvalidConnectionContents b/...l/BlueConfigWithInvalidConnectionContents → ...l/BlueConfigWithInvalidConnectionContents
diff --git a/...ll/BlueConfigWithInvalidConnectionEntries → ...ll/BlueConfigWithInvalidConnectionEntries b/...ll/BlueConfigWithInvalidConnectionEntries → ...ll/BlueConfigWithInvalidConnectionEntries
diff --git a/...cell_all/BlueConfigWithInvalidModOverride → ...cell_all/BlueConfigWithInvalidModOverride b/...cell_all/BlueConfigWithInvalidModOverride → ...cell_all/BlueConfigWithInvalidModOverride
diff --git a/...ll_all/BlueConfigWithInvalidSpikeLocation → ...ll_all/BlueConfigWithInvalidSpikeLocation b/...ll_all/BlueConfigWithInvalidSpikeLocation → ...ll_all/BlueConfigWithInvalidSpikeLocation
diff --git a/...s/examples/sim_twocell_all/output/out.dat → ...s/examples/sim_twocell_all/output/out.dat b/...s/examples/sim_twocell_all/output/out.dat → ...s/examples/sim_twocell_all/output/out.dat
diff --git a/...s/sim_twocell_all/output/out.dat.original → ...s/sim_twocell_all/output/out.dat.original b/...s/sim_twocell_all/output/out.dat.original → ...s/sim_twocell_all/output/out.dat.original
diff --git a/.../examples/sim_twocell_all/output/soma.bbp → .../examples/sim_twocell_all/output/soma.bbp b/.../examples/sim_twocell_all/output/soma.bbp → .../examples/sim_twocell_all/output/soma.bbp
diff --git a/...sts/tests/examples/sim_twocell_all/run.sh → ...sts/tests/examples/sim_twocell_all/run.sh b/...sts/tests/examples/sim_twocell_all/run.sh → ...sts/tests/examples/sim_twocell_all/run.sh
diff --git a/...ests/examples/sim_twocell_all/user.target → ...ests/examples/sim_twocell_all/user.target b/...ests/examples/sim_twocell_all/user.target → ...ests/examples/sim_twocell_all/user.target
diff --git a/...s/examples/sim_twocell_all_mvr/BlueConfig → ...s/examples/sim_twocell_all_mvr/BlueConfig b/...s/examples/sim_twocell_all_mvr/BlueConfig → ...s/examples/sim_twocell_all_mvr/BlueConfig
diff --git a/...amples/sim_twocell_all_mvr/output/out.dat → ...amples/sim_twocell_all_mvr/output/out.dat b/...amples/sim_twocell_all_mvr/output/out.dat → ...amples/sim_twocell_all_mvr/output/out.dat
diff --git a/...m_twocell_all_mvr/output/out.dat.original → ...m_twocell_all_mvr/output/out.dat.original b/...m_twocell_all_mvr/output/out.dat.original → ...m_twocell_all_mvr/output/out.dat.original
diff --git a/...mples/sim_twocell_all_mvr/output/soma.bbp → ...mples/sim_twocell_all_mvr/output/soma.bbp b/...mples/sim_twocell_all_mvr/output/soma.bbp → ...mples/sim_twocell_all_mvr/output/soma.bbp
diff --git a/...tests/examples/sim_twocell_all_mvr/run.sh → ...tests/examples/sim_twocell_all_mvr/run.sh b/...tests/examples/sim_twocell_all_mvr/run.sh → ...tests/examples/sim_twocell_all_mvr/run.sh
diff --git a/.../examples/sim_twocell_all_mvr/user.target → .../examples/sim_twocell_all_mvr/user.target b/.../examples/sim_twocell_all_mvr/user.target → .../examples/sim_twocell_all_mvr/user.target
diff --git a/...sts/examples/sim_twocell_empty/BlueConfig → ...sts/examples/sim_twocell_empty/BlueConfig b/...sts/examples/sim_twocell_empty/BlueConfig → ...sts/examples/sim_twocell_empty/BlueConfig
diff --git a/...examples/sim_twocell_empty/output/out.dat → ...examples/sim_twocell_empty/output/out.dat b/...examples/sim_twocell_empty/output/out.dat → ...examples/sim_twocell_empty/output/out.dat
diff --git a/...sim_twocell_empty/output/out.dat.original → ...sim_twocell_empty/output/out.dat.original b/...sim_twocell_empty/output/out.dat.original → ...sim_twocell_empty/output/out.dat.original
diff --git a/...xamples/sim_twocell_empty/output/soma.bbp → ...xamples/sim_twocell_empty/output/soma.bbp b/...xamples/sim_twocell_empty/output/soma.bbp → ...xamples/sim_twocell_empty/output/soma.bbp
diff --git a/...s/tests/examples/sim_twocell_empty/run.sh → ...s/tests/examples/sim_twocell_empty/run.sh b/...s/tests/examples/sim_twocell_empty/run.sh → ...s/tests/examples/sim_twocell_empty/run.sh
diff --git a/...ts/examples/sim_twocell_empty/user.target → ...ts/examples/sim_twocell_empty/user.target b/...ts/examples/sim_twocell_empty/user.target → ...ts/examples/sim_twocell_empty/user.target
diff --git a/...amples/sim_twocell_forwardskip/BlueConfig → ...amples/sim_twocell_forwardskip/BlueConfig b/...amples/sim_twocell_forwardskip/BlueConfig → ...amples/sim_twocell_forwardskip/BlueConfig
diff --git a/...mples/sim_twocell_forwardskip/user.target → ...mples/sim_twocell_forwardskip/user.target b/...mples/sim_twocell_forwardskip/user.target → ...mples/sim_twocell_forwardskip/user.target
diff --git a/...mples/sim_twocell_minis_replay/BlueConfig → ...mples/sim_twocell_minis_replay/BlueConfig b/...mples/sim_twocell_minis_replay/BlueConfig → ...mples/sim_twocell_minis_replay/BlueConfig
diff --git a/..._replay/output/out-contains-negatives.dat → ..._replay/output/out-contains-negatives.dat b/..._replay/output/out-contains-negatives.dat → ..._replay/output/out-contains-negatives.dat
diff --git a/...s/sim_twocell_minis_replay/output/out.dat → ...s/sim_twocell_minis_replay/output/out.dat b/...s/sim_twocell_minis_replay/output/out.dat → ...s/sim_twocell_minis_replay/output/out.dat
diff --git a/...cell_minis_replay/output/out.dat.original → ...cell_minis_replay/output/out.dat.original b/...cell_minis_replay/output/out.dat.original → ...cell_minis_replay/output/out.dat.original
diff --git a/.../sim_twocell_minis_replay/output/soma.bbp → .../sim_twocell_minis_replay/output/soma.bbp b/.../sim_twocell_minis_replay/output/soma.bbp → .../sim_twocell_minis_replay/output/soma.bbp
diff --git a/.../examples/sim_twocell_minis_replay/run.sh → .../examples/sim_twocell_minis_replay/run.sh b/.../examples/sim_twocell_minis_replay/run.sh → .../examples/sim_twocell_minis_replay/run.sh
diff --git a/...ples/sim_twocell_minis_replay/user.target → ...ples/sim_twocell_minis_replay/user.target b/...ples/sim_twocell_minis_replay/user.target → ...ples/sim_twocell_minis_replay/user.target
diff --git a/...examples/sim_twocell_noisestim/BlueConfig → ...examples/sim_twocell_noisestim/BlueConfig b/...examples/sim_twocell_noisestim/BlueConfig → ...examples/sim_twocell_noisestim/BlueConfig
diff --git a/...ples/sim_twocell_noisestim/output/out.dat → ...ples/sim_twocell_noisestim/output/out.dat b/...ples/sim_twocell_noisestim/output/out.dat → ...ples/sim_twocell_noisestim/output/out.dat
diff --git a/...twocell_noisestim/output/out.dat.original → ...twocell_noisestim/output/out.dat.original b/...twocell_noisestim/output/out.dat.original → ...twocell_noisestim/output/out.dat.original
diff --git a/...les/sim_twocell_noisestim/output/soma.bbp → ...les/sim_twocell_noisestim/output/soma.bbp b/...les/sim_twocell_noisestim/output/soma.bbp → ...les/sim_twocell_noisestim/output/soma.bbp
diff --git a/...sts/examples/sim_twocell_noisestim/run.sh → ...sts/examples/sim_twocell_noisestim/run.sh b/...sts/examples/sim_twocell_noisestim/run.sh → ...sts/examples/sim_twocell_noisestim/run.sh
diff --git a/...xamples/sim_twocell_noisestim/user.target → ...xamples/sim_twocell_noisestim/user.target b/...xamples/sim_twocell_noisestim/user.target → ...xamples/sim_twocell_noisestim/user.target
diff --git a/...examples/sim_twocell_pulsestim/BlueConfig → ...examples/sim_twocell_pulsestim/BlueConfig b/...examples/sim_twocell_pulsestim/BlueConfig → ...examples/sim_twocell_pulsestim/BlueConfig
diff --git a/...ples/sim_twocell_pulsestim/output/out.dat → ...ples/sim_twocell_pulsestim/output/out.dat b/...ples/sim_twocell_pulsestim/output/out.dat → ...ples/sim_twocell_pulsestim/output/out.dat
diff --git a/...twocell_pulsestim/output/out.dat.original → ...twocell_pulsestim/output/out.dat.original b/...twocell_pulsestim/output/out.dat.original → ...twocell_pulsestim/output/out.dat.original
diff --git a/...les/sim_twocell_pulsestim/output/soma.bbp → ...les/sim_twocell_pulsestim/output/soma.bbp b/...les/sim_twocell_pulsestim/output/soma.bbp → ...les/sim_twocell_pulsestim/output/soma.bbp
diff --git a/...sts/examples/sim_twocell_pulsestim/run.sh → ...sts/examples/sim_twocell_pulsestim/run.sh b/...sts/examples/sim_twocell_pulsestim/run.sh → ...sts/examples/sim_twocell_pulsestim/run.sh
diff --git a/...xamples/sim_twocell_pulsestim/user.target → ...xamples/sim_twocell_pulsestim/user.target b/...xamples/sim_twocell_pulsestim/user.target → ...xamples/sim_twocell_pulsestim/user.target
diff --git a/...ts/examples/sim_twocell_replay/BlueConfig → ...ts/examples/sim_twocell_replay/BlueConfig b/...ts/examples/sim_twocell_replay/BlueConfig → ...ts/examples/sim_twocell_replay/BlueConfig
diff --git a/...xamples/sim_twocell_replay/output/out.dat → ...xamples/sim_twocell_replay/output/out.dat b/...xamples/sim_twocell_replay/output/out.dat → ...xamples/sim_twocell_replay/output/out.dat
diff --git a/...im_twocell_replay/output/out.dat.original → ...im_twocell_replay/output/out.dat.original b/...im_twocell_replay/output/out.dat.original → ...im_twocell_replay/output/out.dat.original
diff --git a/...amples/sim_twocell_replay/output/soma.bbp → ...amples/sim_twocell_replay/output/soma.bbp b/...amples/sim_twocell_replay/output/soma.bbp → ...amples/sim_twocell_replay/output/soma.bbp
diff --git a/.../tests/examples/sim_twocell_replay/run.sh → .../tests/examples/sim_twocell_replay/run.sh b/.../tests/examples/sim_twocell_replay/run.sh → .../tests/examples/sim_twocell_replay/run.sh
diff --git a/...s/examples/sim_twocell_replay/user.target → ...s/examples/sim_twocell_replay/user.target b/...s/examples/sim_twocell_replay/user.target → ...s/examples/sim_twocell_replay/user.target
diff --git a/...lulab-bb5-tests/tests/helpers/__init__.py → ...lulab-bb5-tests/tests/helpers/__init__.py b/...lulab-bb5-tests/tests/helpers/__init__.py → ...lulab-bb5-tests/tests/helpers/__init__.py
diff --git a/...llulab-bb5-tests/tests/helpers/circuit.py → ...llulab-bb5-tests/tests/helpers/circuit.py b/...llulab-bb5-tests/tests/helpers/circuit.py → ...llulab-bb5-tests/tests/helpers/circuit.py
diff --git a/...ab-bb5-tests/tests/test_circuit_access.py → ...ab-bb5-tests/tests/test_circuit_access.py b/...ab-bb5-tests/tests/test_circuit_access.py → ...ab-bb5-tests/tests/test_circuit_access.py
diff --git a/bluecellulab-bb5-tests/tests/test_helpers.py → ...ecellulab-bb5-tests/tests/test_helpers.py b/bluecellulab-bb5-tests/tests/test_helpers.py → ...ecellulab-bb5-tests/tests/test_helpers.py
diff --git a/bluecellulab-bb5-tests/tests/test_iotools.py → ...ecellulab-bb5-tests/tests/test_iotools.py b/bluecellulab-bb5-tests/tests/test_iotools.py → ...ecellulab-bb5-tests/tests/test_iotools.py
diff --git a/...ab-bb5-tests/tests/test_neuron_globals.py → ...ab-bb5-tests/tests/test_neuron_globals.py b/...ab-bb5-tests/tests/test_neuron_globals.py → ...ab-bb5-tests/tests/test_neuron_globals.py
diff --git a/...bb5-tests/tests/test_simulation_access.py → ...bb5-tests/tests/test_simulation_access.py b/...bb5-tests/tests/test_simulation_access.py → ...bb5-tests/tests/test_simulation_access.py
diff --git a/...bb5-tests/tests/test_sonata_proxy_gpfs.py → ...bb5-tests/tests/test_sonata_proxy_gpfs.py b/...bb5-tests/tests/test_sonata_proxy_gpfs.py → ...bb5-tests/tests/test_sonata_proxy_gpfs.py
diff --git a/bluecellulab-bb5-tests/tests/test_ssim.py → ...bluecellulab-bb5-tests/tests/test_ssim.py b/bluecellulab-bb5-tests/tests/test_ssim.py → ...bluecellulab-bb5-tests/tests/test_ssim.py
@@ -125,7 +125,7 @@ def test_compare_traces(self):
         assert len(voltage_bglib) == len(time_bglib) == 1000
 
         voltage_bglibpy = self.ssim_bglibpy.get_voltage_trace(self.gid)[
-            0 : len(voltage_bglib)
+            0: len(voltage_bglib)
         ]
 
         rms_error = rms(voltage_bglibpy, voltage_bglib)
@@ -176,7 +176,7 @@ def test_compare_traces(self):
         assert len(voltage_bglib) == 1000
 
         voltage_bglibpy = self.ssim_bglibpy.get_voltage_trace(self.gid)[
-            0 : len(voltage_bglib)
+            0: len(voltage_bglib)
         ]
 
         rms_error = rms(voltage_bglibpy, voltage_bglib)
@@ -189,7 +189,7 @@ def test_disable_replay(self):
 
         voltage_bglibpy_withoutreplay = (
             self.ssim_bglibpy_withoutreplay.get_voltage_trace(self.gid)[
-                0 : len(voltage_bglib)
+                0: len(voltage_bglib)
             ]
         )
 
@@ -231,7 +231,7 @@ def test_compare_traces(self):
         assert len(voltage_bglib) == 1000
 
         voltage_bglibpy = self.ssim_bglibpy.get_voltage_trace(self.gid)[
-            0 : len(voltage_bglib)
+            0: len(voltage_bglib)
         ]
 
         rms_error = rms(voltage_bglibpy, voltage_bglib)
@@ -273,7 +273,7 @@ def test_compare_traces(self):
         assert len(voltage_bglib) == 1000
 
         voltage_bglibpy = self.ssim_bglibpy.get_voltage_trace(self.gid)[
-            0 : len(voltage_bglib)
+            0: len(voltage_bglib)
         ]
 
         rms_error = rms(voltage_bglibpy, voltage_bglib)
@@ -424,7 +424,7 @@ def test_compare_traces(self):
         assert len(self.voltage_bglib_mvr) == 1000
 
         voltage_bglibpy_mvr = self.ssim_bglibpy_mvr.get_voltage_trace(self.gid)[
-            0 : len(self.voltage_bglib_mvr)
+            0: len(self.voltage_bglib_mvr)
         ]
 
         rms_error = rms(voltage_bglibpy_mvr, self.voltage_bglib_mvr)
@@ -482,7 +482,7 @@ def test_compare_traces(self):
         assert len(voltage_bglib) == 1000
 
         voltage_bglibpy = self.ssim_bglibpy.get_voltage_trace(self.gid)[
-            0 : len(voltage_bglib)
+            0: len(voltage_bglib)
         ]
 
         rms_error = rms(voltage_bglibpy, voltage_bglib)
@@ -495,7 +495,7 @@ def test_disable_minis(self):
 
         voltage_bglibpy_withoutminis = self.ssim_bglibpy_withoutminis.get_voltage_trace(
             self.gid
-        )[0 : len(voltage_bglib)]
+        )[0: len(voltage_bglib)]
 
         rms_error = rms(voltage_bglibpy_withoutminis, voltage_bglib)
 
@@ -546,7 +546,7 @@ def test_compare_traces(self):
         assert len(voltage_bglib) == 1000
 
         voltage_bglibpy = self.ssim_bglibpy.get_voltage_trace(self.gid)[
-            0 : len(voltage_bglib)
+            0: len(voltage_bglib)
         ]
 
         rms_error = rms(voltage_bglibpy, voltage_bglib)
@@ -559,7 +559,7 @@ def test_disable_stimuli(self):
 
         voltage_bglibpy_withoutstim = self.ssim_bglibpy_withoutstim.get_voltage_trace(
             self.gid
-        )[0 : len(voltage_bglib)]
+        )[0: len(voltage_bglib)]
 
         rms_error = rms(voltage_bglibpy_withoutstim, voltage_bglib)
         assert rms_error > 1.0
@@ -608,7 +608,7 @@ def test_compare_traces(self):
         assert len(voltage_bglib) == 1000
 
         voltage_bglibpy = self.ssim_bglibpy.get_voltage_trace(self.gid)[
-            0 : len(voltage_bglib)
+            0: len(voltage_bglib)
         ]
 
         rms_error = rms(voltage_bglibpy, voltage_bglib)
@@ -622,7 +622,7 @@ def test_disable_stimuli(self):
 
         voltage_bglibpy_withoutstim = self.ssim_bglibpy_withoutstim.get_voltage_trace(
             self.gid
-        )[0 : len(voltage_bglib)]
+        )[0: len(voltage_bglib)]
 
         rms_error = rms(voltage_bglibpy_withoutstim, voltage_bglib)
         assert rms_error > 20.0

diff --git a/...ellulab-bb5-tests/tests/test_ssim_gpfs.py → ...ellulab-bb5-tests/tests/test_ssim_gpfs.py b/...ellulab-bb5-tests/tests/test_ssim_gpfs.py → ...ellulab-bb5-tests/tests/test_ssim_gpfs.py
diff --git a/...b5-tests/tests/test_synapse_parameters.py → ...b5-tests/tests/test_synapse_parameters.py b/...b5-tests/tests/test_synapse_parameters.py → ...b5-tests/tests/test_synapse_parameters.py
diff --git a/...b5-tests/tests/test_synapse_properties.py → ...b5-tests/tests/test_synapse_properties.py b/...b5-tests/tests/test_synapse_properties.py → ...b5-tests/tests/test_synapse_properties.py
diff --git a/bluecellulab-bb5-tests/tests/test_tools.py → ...luecellulab-bb5-tests/tests/test_tools.py b/bluecellulab-bb5-tests/tests/test_tools.py → ...luecellulab-bb5-tests/tests/test_tools.py
diff --git a/...cellulab-bb5-tests/tests/test_validate.py → ...cellulab-bb5-tests/tests/test_validate.py b/...cellulab-bb5-tests/tests/test_validate.py → ...cellulab-bb5-tests/tests/test_validate.py
diff --git a/bluecellulab-bb5-tests/tox.ini → tests/bluecellulab-bb5-tests/tox.ini b/bluecellulab-bb5-tests/tox.ini → tests/bluecellulab-bb5-tests/tox.ini
diff --git a/tests/helpers/os_utils.py b/tests/helpers/os_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/tests/test_analysis/test_inject_sequence.py b/tests/test_analysis/test_inject_sequence.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/tests/test_ballstick.py b/tests/test_ballstick.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/tests/test_bglib.py b/tests/test_bglib.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/tests/test_cell/test_cell_dict.py b/tests/test_cell/test_cell_dict.py
@@ -1,4 +1,4 @@
-# Copyright 2012-2024 Blue Brain Project / EPFL
+# Copyright 2023-2024 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.