Code

Network plot#104

Code

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anilbey merged 31 commits intomainBlueBrain/BlueCelluLab:mainfrom network-plotBlueBrain/BlueCelluLab:network-plotCopy head branch name to clipboardDec 5, 2023

+294-84

Commits

Commits on Oct 5, 2023

• type annotate get_precise_record_dt

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  69979f8

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• update docs of Cell constructor

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  19f1ae4

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• fix get_section_id attribute error

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• update Cell::area docstring

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• add unit test for Cell::area

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• synlocation_to_segx to always return float

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Commits on Oct 13, 2023

• merge main into terminology

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• make use_random123_stochkv non nullable

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• add return type annotations

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Commits on Oct 24, 2023

• Merge branch 'main' into terminology

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Commits on Oct 25, 2023

• update until pre_gid_synapse_ids

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• remove ssim.connections

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Commits on Oct 26, 2023

• keep cell_id inside cell, not gid

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• keep cell_id in synapse, not gid

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• draft: add network plot

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Commits on Nov 1, 2023

• build and plot the graph within the 'sonata-network' notebook

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Commits on Nov 22, 2023

• Merge branch 'main' into network-plot

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• fix kernelspec in sonata-network.ipynb

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• lint fix

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• Add 'networkx' to package dependencies in setup.py

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• Add mypy ignore comments for matplotlib attrs

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Commits on Dec 4, 2023

• add unit tests for graph.py

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• update NetworkX minimum version requirement

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• add comments in sonata-network notebook

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• Merge branch 'main' into network-plot

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• lint fix

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  9fbc539

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• downgrade networkx to 3.1 for compatibility

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  35e1286

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• fix variable name

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• fix template_format to v6

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• refactor tests to use pytest framework

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• lint fix

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